Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq3008 264 2e-65 seq594 84.2 3e-11 >seq3008 Length=76608 Score = 264 bits (292), Expect = 2e-65 Identities = 1244/1964 (63%), Gaps = 29/1964 (1%) Strand=Plus/Plus Query 77061 TTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTA 77120 ||||| || || || ||||||| |||||| || | || | || ||||| || || Sbjct 39976 TTCTTCATCTCCTCGTTCCACAGCCCCCTCTCAGTCAGGTCTTTGAGCAGATGGGGGTTG 40035 Query 77121 ACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCC 77180 ||||| || || || || || | || || || ||||| || || ||||| || || || Sbjct 40036 ACTATCTGGAACTCCCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGGCTCG 40095 Query 77181 ACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAAT 77240 | || || ||||| |||| || || || || || || || ||||| || |||| || Sbjct 40096 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGCGCCAGCAGC 40155 Query 77241 AAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGA 77300 | || || || | || || | ||| || || || || ||| ||| || Sbjct 40156 AGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGCAGGCCCCAGTCCAGCAGG 40215 Query 77301 TCTGAAGG-TACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCC 77359 || | || | | | ||||| | ||||| || || || || || | | || Sbjct 40216 TCGGTGGGCTTCTTC-TCCCACATGTCGTACTGCAGGATGCCCCGGCTGACGGGGCAGCC 40274 Query 77360 ATTATATGTTTCATAAGGTCCT---TCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGC 77416 || || || || || || || | | || || || || ||||| |||| || Sbjct 40275 CGCGTACGTCTCGTAGGGGCCGAGCTCGG---CGGCCAGCTCGCAGCTCGCCTCCAGGGC 40331 Query 77417 TCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAA 77476 |||| || | || ||||| |||| | | || || || ||||| || || || Sbjct 40332 GGCGTAGTAGAGGGTCTCGAAGATCTGCGTGTTCAGCAGCTGAGCTTCGGGGCTCTCGAA 40391 Query 77477 CGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCT 77536 ||| ||| | | || || ||||| || || || || || || || || || || || | Sbjct 40392 CGGGTAACGCATGAGGATGAAGGCGTCGGCCAAGCCTTGCACGCCGATTCCTATCGGCCG 40451 Query 77537 ATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTT 77596 || | | | ||||| ||| || || || | ||||| | || ||||| || || || Sbjct 40452 GTGGCGCCTGTTGGACTTTTCGGCCTCGGGCACCGGATAGAAGTTGATGTCGATGATCTT 40511 Query 77597 ATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAA--TCTT 77654 || | ||| | || | |||||| |||| | ||||| ||| ||||| ||| Sbjct 40512 GTTCAAGTTTTTGACGATTACTTTGGTCACGGCTGCGAGTTTCTTAAAGTCAAAGGTCTG 40571 Query 77655 C-CATCTATAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATT 77713 | | | || ||||||| | || | || || || || || || || ||||| | Sbjct 40572 CTCGGGGGTGACGTACATGTTGAGCGCGACCGAGGCCAGGTTGCAGACGGCGACCTCGTC 40631 Query 77714 AGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATT 77773 | ||| |||| | || || || || || || || | ||||| ||||||||||| Sbjct 40632 GTGGCTGGTGTATTCGACGATTTCCGTGCAGAGGTTGCTGGACTTGATGGTGCCCAGATT 40691 Query 77774 TTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTC 77833 || ||||||||||| | ||||| | ||| || || || || | || || |||||||| Sbjct 40692 CTGGTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTGCCGGTTTC 40751 Query 77834 AATCTGTGATTCGATAATAGATTTCCAGA-CGACTCTAGCTTTTATCATAGATTTGTATC 77892 |||| || ||||| || | | ||| | | || | || | || ||| | Sbjct 40752 GGTCTGGGACTCGATGATGGCGTGCCACAGCTGCT-GGGACTTGACCACGCGCTTGGCCC 40810 Query 77893 GCCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCA 77952 || ||| | || || || || ||| |||||| || || ||||| || |||| Sbjct 40811 TCCCCTCCTTCTCGTAGGACGTGTAGAGCTTTTCAAACTCCTCCCCCCAGCACTCGTCCA 40870 Query 77953 ATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCA 78012 || ||||| || || || ||||| | |||||||| | || || || |||| Sbjct 40871 GCCCGGGGCACTCGTTGGGACACATGAGGGACCAGTCCTGGTTGCTCTCCACCCGCTTCA 40930 Query 78013 TAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTC 78072 | || || || || ||||| | || || || || | || ||| || || || |||| Sbjct 40931 TGAACAGGTCGGGGATCCACATGGCGTAGAAAAGGTCCCTGGCTCTCTGCTCCTCCTTTC 40990 Query 78073 CTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATA 78132 | || ||||| || || || || || || | | ||| | ||||| || || || || | Sbjct 40991 CCGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACGTCAAAGTGCCAGGGCTCCAGGTACA 41050 Query 78133 TTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTAT 78192 | || | | | || |||| || || || ||||| || | || | || ||||| || | Sbjct 41051 TGGCGAAAGCGCCGGGTCTCTTGTTCCCGCCCTGGTCCACGTAACGCGCCGTGTTGTTGT 41110 Query 78193 AAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTC 78252 |||| || | ||| || | | ||||| || | || || || || | || || || | Sbjct 41111 AAACCCTTAGCATGGGGACGAGCCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTGC 41170 Query 78253 CACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAG 78312 | | | ||| || || | || | || || || || || || || || || | Sbjct 41171 CCGTCGAGCGGATGGAGCTGACGGCCACGCCGATCCCCCCGGCTGATTTGGAGATGAGGG 41230 Query 78313 CGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAA 78372 |||| | ||||| || |||||||| ||||| || ||||| ||| ||||| || || | Sbjct 41231 CGCACTGCTTCAAGGTGTCGTAGATGCCCTCGATGCTGTCGTCCTTCATGGCGAGCAGGA 41290 Query 78373 AACAGCTAGACATTTG----ATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCA 78428 | ||||| |||| || || || || || || || || | || || || || Sbjct 41291 AGCAGCTGGACAGCTGTGGCCTGTTG----GTGCCCGCGTTGAAGAGGGTGGGGGAGGCG 41346 Query 78429 TGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCAT 78488 || || ||||| | || || || || ||||| || || || || | || |||||| | Sbjct 41347 TGGGTGAACCACCTCTCCGACAGCAGGTTGTACGTCTCGATGGCCGCGTCGATGTCCGTT 41406 Query 78489 TGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTA 78548 | || || || || | || ||||| | ||| ||||| || | || || || Sbjct 41407 TCGTGGATCCCGACGGACACGCGCATGAGCATGTGCTGCGGCCGCTCGGCCACTTTGCCG 41466 Query 78549 TTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 78608 || || ||||||| ||| ||| |||| || || || || || ||||||| || || Sbjct 41467 TTGATCTTCAACAGGTAGGATCGCTCCAGGGTCTTGAAGCCGAAGAAGTTGTAGGAGAAA 41526 Query 78609 TCTCTCTCGTAAATAATAACAGAATTTAGTTTATCTTTGTATTTGGTAACAATATCCATG 78668 |||| ||| |||| || | || || || ||||||| | ||||| | || Sbjct 41527 TCTCGGTCGAAAATGATGGCCGAGTTGAGGCGGTCTTTGTTGTCTTGAACAA---GCTTG 41583 Query 78669 ACAGTAGTT----GAAATAATAGGAGATCGTACACCATTTTTAGGATTAACATAGTTAAA 78724 | || ||| || || || || || | | || || || || ||||| | Sbjct 41584 AGCGT-GTTCTCGGAGATCATGGGGGAGTGGCGTCTGTTCAGGGGGTTGACGTAGTTGTA 41642 Query 78725 TAAATCTTCCATTACATCACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGC 78784 | || ||||| || || || || | || || || || ||||| | || || || || Sbjct 41643 CAGGTCCTCCATCACCTCGCTGAACACCTTCTTCGTCTCTTTGTGCAAGTTGGAGACGGC 41702 Query 78785 TATTCTTGCAGCTAGAATAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTC 78844 || | || || || || || || || || |||| || || ||||| || || || Sbjct 41703 GATCCGCGCCGCCAGGATGGCGTAGTCGGGGTGTTTAGTCGTGAGGGTGGCGGCGATCTC 41762 Query 78845 TGCCGCTAAAATATCTAACTCTATAGTTGTGACCCCATTATATAGTCCTTGAATAACTTT 78904 || || | | || | ||| | || ||||| || | || | || || || || || Sbjct 41763 CGCGGCGAGCGTGTCGAGCTCCACCGTCGTGACGCCGCTGTACAAACCCTGGATCACCTT 41822 Query 78905 CATGGCGATTTTGACAGGATCTACAAACTCAGTGTTCAATCCATAACATAATTTTCTAAT 78964 ||| | ||| | | | ||||| ||||| |||| ||| | ||| || || | || || Sbjct 41823 CATCGTGATCTGGGCCGGATCCACAAAGTCAGCGTTGAGTCCGTAGCACAGCTTCTGGAT 41882 Query 78965 ACGAGATGTGATTTTATCAAATATAACATTCTCCTTGCATCCAT 79008 || || ||||| || ||||| || ||| ||| | || |||| Sbjct 41883 GCGCGACGTGATCTTGTCAAACATGACACGCTCTTGGCGGCCAT 41926 Score = 111 bits (122), Expect = 2e-19 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908 |||| |||||||| |||||||| || |||||| || | || || || || || || | Sbjct 39642 TCCAGCCGTAGAAGTGCATGCTGGTGAGTTTGCCGTAGTTGGGCTCTGCGATGTGGATGT 39701 Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968 ||| |||||| || || || ||||| || || | ||||||||||| || | ||||||| Sbjct 39702 TCAGCGACTGGCTCTGGTCAATGAAGGCGCCGCGGTCAGCCGCCATCTTGAGTATGGTCT 39761 Query 76969 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 77019 | || | |||||||| | |||||| | | || || | ||||||||||| Sbjct 39762 TCTGGGAGATTTCCCAGACGGTTTTGTACAGCTGCTTCAGATCATCTGGAA 39812 >seq594 Length=47165 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 77733 ATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTA 77792 ||||| || || ||||| || |||| || ||||||||||| || ||||||||||| | Sbjct 29801 ATCTCTGTGCACAGATTGCTGGATTTTATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTG 29860 Query 77793 TTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAAT 77851 ||||| | |||||| || || || |||| || || ||||| |||| || || || || Sbjct 29861 TTGCAGGCGTCCTTGTAGAGCATGTACGGTGTACCAGTTTCTGTCTGCGACTCAATGAT 29919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694521556264480