Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq3008 268 1e-66 seq594 96.9 5e-15 >seq3008 Length=76608 Score = 268 bits (296), Expect = 1e-66 Identities = 1233/1946 (63%), Gaps = 25/1946 (1%) Strand=Plus/Plus Query 75656 TTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTA 75715 ||||| ||||| || ||||||| ||||| || | || | || ||||| || || Sbjct 39976 TTCTTCATCTCCTCGTTCCACAGCCCCCTCTCAGTCAGGTCTTTGAGCAGATGGGGGTTG 40035 Query 75716 ACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCC 75775 || || || || || || || | || || || ||||| || || ||||| || || || Sbjct 40036 ACTATCTGGAACTCCCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGGCTCG 40095 Query 75776 ACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAAT 75835 | || || ||||| |||| || || || || || || || ||||| || |||| || Sbjct 40096 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGCGCCAGCAGC 40155 Query 75836 AAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGA 75895 | || || || | || || | ||| || || || || ||| ||| || Sbjct 40156 AGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGCAGGCCCCAGTCCAGCAGG 40215 Query 75896 TCTGATGG-TACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCC 75954 || | || | | | ||||| | ||||| || || || || ||| | | || Sbjct 40216 TCGGTGGGCTTCTTC-TCCCACATGTCGTACTGCAGGATGCCCCGGCTGACGGGGCAGCC 40274 Query 75955 ATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACC 76014 || || ||||| | ||| || | || || ||||| |||||||| | || | Sbjct 40275 CGCGTACGTCTCGTAGGGGCCGAGCTCGGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGGC 40334 Query 76015 GTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGG 76074 ||| || | || ||||| |||| | | || || || ||||| | || || || || Sbjct 40335 GTAGTAGAGGGTCTCGAAGATCTGCGTGTTCAGCAGCTGAGCTTCGGGGCTCTCGAACGG 40394 Query 76075 ATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATG 76134 ||| | | || || || || || || | || || || || || || || || | || Sbjct 40395 GTAACGCATGAGGATGAAGGCGTCGGCCAAGCCTTGCACGCCGATTCCTATCGGCCGGTG 40454 Query 76135 TCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATT 76194 | | | ||||| |||| || || || | || || | || || || || || || || Sbjct 40455 GCGCCTGTTGGACTTTTCGGCCTCGGGCACCGGATAGAAGTTGATGTCGATGATCTTGTT 40514 Query 76195 GAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTTCCATC 76254 | ||| |||| | |||||| |||| | ||||| ||| ||||| | || Sbjct 40515 CAAGTTTTTGACGATTACTTTGGTCACGGCTGCGAGTTTCTTAAAGTCAAAGGTCTGCTC 40574 Query 76255 TA---TCACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCAT--TA 76309 | || |||| || || || | || || || || || ||||| ||||| | | Sbjct 40575 GGGGGTGACGTACATGTTGAGCGCGACCGAGGCCAGGTTGCAGACGGCGACCTCGTCGTG 40634 Query 76310 GCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTT 76369 || ||| |||| | || |||||||| || || || ||||||| || || ||||| Sbjct 40635 GC--TGGTGTATTCGACGATTTCCGTGCAGAGGTTGCTGGACTTGATGGTGCCCAGATTC 40692 Query 76370 TGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCA 76429 || ||||||||||| |||| || | ||| || || || | | || || || ||||| Sbjct 40693 TGGTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTGCCGGTTTCG 40752 Query 76430 ATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTT-ATTATAGATTTGTATCG 76488 |||| || ||||| || | | ||| | | || | || | | ||| | Sbjct 40753 GTCTGGGACTCGATGATGGCGTGCCACA-GCTGCTGGGACTTGACCACGCGCTTGGCCCT 40811 Query 76489 CTTCTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAA 76548 | ||| | || || || || | | |||||| || || ||||| || |||| Sbjct 40812 CCCCTCCTTCTCGTAGGACGTGTAGAGCTTTTCAAACTCCTCCCCCCAGCACTCGTCCAG 40871 Query 76549 ACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCAT 76608 || || || || || |||||||| | ||||| || | || ||||| ||||| Sbjct 40872 CCCGGGGCACTCGTTGGGACACATGAGGGACCAGTCCTGGTTGCTCTCCACCCGCTTCAT 40931 Query 76609 AAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCC 76668 || || || || ||||| | || || || || | || ||| | || || ||||| Sbjct 40932 GAACAGGTCGGGGATCCACATGGCGTAGAAAAGGTCCCTGGCTCTCTGCTCCTCCTTTCC 40991 Query 76669 TGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATAT 76728 || ||||| || || || ||||| || | | ||| | ||||| || || || || || Sbjct 40992 CGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACGTCAAAGTGCCAGGGCTCCAGGTACAT 41051 Query 76729 CGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATA 76788 || | | | || |||| || || || ||||| || | || | || ||||| || || Sbjct 41052 GGCGAAAGCGCCGGGTCTCTTGTTCCCGCCCTGGTCCACGTAACGCGCCGTGTTGTTGTA 41111 Query 76789 AACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCC 76848 ||| || | ||| || | | ||||| || | || || || || | || || || || Sbjct 41112 AACCCTTAGCATGGGGACGAGCCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTGCC 41171 Query 76849 ACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGC 76908 | || || || | | | ||| || || || || ||| ||||| || || Sbjct 41172 CGTCGAGCGGATGGAGCTGACGGCCACGCCGATCCCCCCGGCTGATTTGGAGATGAGGGC 41231 Query 76909 ACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAA 76968 || | ||||| ||||| ||||||||||| || || || ||| ||||| || || || Sbjct 41232 GCACTGCTTCAAGGTGTCGTAGATGCCCTCGATGCTGTCGTCCTTCATGGCGAGCAGGAA 41291 Query 76969 ACAGCTAGACATTTG----ATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCAT 77024 ||||| |||| || || || || || || || || | || || || || | Sbjct 41292 GCAGCTGGACAGCTGTGGCCTGTTG----GTGCCCGCGTTGAAGAGGGTGGGGGAGGCGT 41347 Query 77025 GAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATT 77084 | |||||||| | || || || || ||||| || || || | || || || ||| || Sbjct 41348 GGGTGAACCACCTCTCCGACAGCAGGTTGTACGTCTCGATGGCCGCGTCGATGTCCGTTT 41407 Query 77085 GATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTAT 77144 || || || || | || ||||| | ||| ||||| || || || | || | Sbjct 41408 CGTGGATCCCGACGGACACGCGCATGAGCATGTGCTGCGGCCGCTCGGCCACTTTGCCGT 41467 Query 77145 TTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 77204 | || ||||||| ||| ||| |||| || || || || || ||||||| || || | Sbjct 41468 TGATCTTCAACAGGTAGGATCGCTCCAGGGTCTTGAAGCCGAAGAAGTTGTAGGAGAAAT 41527 Query 77205 CTCTTTCGTAAATAATAACCGAATTTAGTTTGTCCTTATATTTGGTAACAATATCCATGA 77264 ||| ||| |||| || |||| || || ||| || | | ||||| | ||| Sbjct 41528 CTCGGTCGAAAATGATGGCCGAGTTGAGGCGGTCTTTGTTGTCTTGAACAA---GCTTGA 41584 Query 77265 CAGTGGT---AGAAATAATTGGAGATCGTATTCCATTTTTAGGATTAACATAGTTAAATA 77321 ||| | || || || || || | || || || || || ||||| | | Sbjct 41585 GCGTGTTCTCGGAGATCATGGGGGAGTGGCGTCTGTTCAGGGGGTTGACGTAGTTGTACA 41644 Query 77322 AGTCTTCCATTACGTCGCTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTA 77381 ||| ||||| || ||||| || | || || || || ||||| | || || ||||| | Sbjct 41645 GGTCCTCCATCACCTCGCTGAACACCTTCTTCGTCTCTTTGTGCAAGTTGGAGACGGCGA 41704 Query 77382 TTCTAGCAGCTAGAATTGCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTG 77441 | | || || || || || ||||| || |||| || ||| |||||| || || || | Sbjct 41705 TCCGCGCCGCCAGGATGGCGTAGTCGGGGTGTTTAGTCGTGAGGGTGGCGGCGATCTCCG 41764 Query 77442 CCGCTAAAGTATCTAATTCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCA 77501 | || | || || | || | || || || ||| | || | || || || || |||| Sbjct 41765 CGGCGAGCGTGTCGAGCTCCACCGTCGTGACGCCGCTGTACAAACCCTGGATCACCTTCA 41824 Query 77502 TGGCTATTTTGATAGGATCTACAAACTCGGTGTTCAAACCATAACATAATTTTCTAATAC 77561 | | || | | ||||| ||||| || | ||| | || || || | || || | Sbjct 41825 TCGTGATCTGGGCCGGATCCACAAAGTCAGCGTTGAGTCCGTAGCACAGCTTCTGGATGC 41884 Query 77562 GAGATGTGATTTTATCAAACATGACA 77587 | || ||||| || |||||||||||| Sbjct 41885 GCGACGTGATCTTGTCAAACATGACA 41910 Score = 111 bits (122), Expect = 2e-19 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503 |||| |||||||| |||||||| || |||||| || | || || || || || || | Sbjct 39642 TCCAGCCGTAGAAGTGCATGCTGGTGAGTTTGCCGTAGTTGGGCTCTGCGATGTGGATGT 39701 Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563 ||| |||||| || || || ||||| || || | ||||||||||| || | ||||||| Sbjct 39702 TCAGCGACTGGCTCTGGTCAATGAAGGCGCCGCGGTCAGCCGCCATCTTGAGTATGGTCT 39761 Query 75564 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 75614 | || | |||||||| | |||||| | | || || | ||||||||||| Sbjct 39762 TCTGGGAGATTTCCCAGACGGTTTTGTACAGCTGCTTCAGATCATCTGGAA 39812 >seq594 Length=47165 Score = 96.9 bits (106), Expect = 5e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || |||||||| |||| ||||| || |||||||||||||| || || || || || ||| Sbjct 30931 GTGCCTGCATTGAACAGAGTAGGTGAGGCATGAGTGAACCACTTCTCTGACAGGAGGTTG 30990 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 || |||||||| | || || || || | ||||||||| || || || || | ||| | | Sbjct 30991 TAGGTTTCAATGGCAGCGTCGATGTCTCCTTGATGAATCCCGACCGCCACTCTCATTAGC 31050 Query 77114 ATATGCTGAGG 77124 || ||||| || Sbjct 31051 ATGTGCTGGGG 31061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712783284642240