Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq562 122 2e-22 >seq562 Length=198046 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || |||||||| || || ||||| || ||||||||||| |||| | || | |||||| Sbjct 185303 AGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTATTCGGAGAGGGTGCGGCCATCT 185362 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||| ||||| ||||||||||| || | | ||| |||||||| || Sbjct 185363 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGGATACCTTCCTTATCC 185422 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || || || |||| | | |||| ||| || || || || || || Sbjct 185423 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCGACCTCCAGCGTGATGGTC 185482 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| ||||| ||||||||||||| |||||| Sbjct 185483 TTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 185514 Score = 118 bits (130), Expect = 2e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || |||||||| || || ||||| || ||||||||||| |||| | || | |||||| Sbjct 185759 AGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 185818 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||| ||||| ||||||||||| || | | ||| |||||||| || Sbjct 185819 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGGATACCTTCCTTATCC 185878 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || || || |||| | | |||| ||| || ||||| || || || Sbjct 185879 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCGACCTCAAGGGTGATGGTC 185938 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||||| ||||| || ||||| |||| |||||| || Sbjct 185939 TTGCCAGTGAGGGTTTTCACAAAGATCTGCATGTT 185973 Score = 116 bits (128), Expect = 9e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || |||||||| || || ||||| || ||||||||||| |||| | || | |||||| Sbjct 188461 AGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 188520 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||| ||||| ||||||||||| || | | ||| |||||||| || Sbjct 188521 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTATCC 188580 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || || || |||| | | |||| ||| || || || || || || Sbjct 188581 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCGACCTCCAGCGTGATGGTC 188640 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| ||||| |||||||| |||| |||||| Sbjct 188641 TTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 188672 Score = 116 bits (128), Expect = 9e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || |||||||| || || || || || ||||||||||| |||| | || | |||||| Sbjct 188689 AGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 188748 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||| ||||| ||||||||||| || | | ||| |||||||| || Sbjct 188749 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTATCC 188808 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || || || |||| | | |||| ||| || || || || || || Sbjct 188809 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCGACCTCCAGCGTGATGGTC 188868 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| ||||| ||||||||||||| |||||| Sbjct 188869 TTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 188900 Score = 113 bits (124), Expect = 1e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || |||||||| || || || || || ||||||||||| |||| | || | |||||| Sbjct 188917 AGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 188976 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||| ||||| ||||||||||| || | | ||| |||||||| || Sbjct 188977 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTATCC 189036 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || || || |||| | | |||| ||| || || || || || || Sbjct 189037 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCGACCTCCAGCGTGATGGTC 189096 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| ||||| |||||||| |||| |||||| Sbjct 189097 TTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 189128 Score = 113 bits (124), Expect = 1e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || |||||||| || || || || || ||||||||||| |||| | || | |||||| Sbjct 189145 AGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 189204 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||| ||||| ||||||||||| || | | ||| |||||||| || Sbjct 189205 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTATCC 189264 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || || || |||| | | |||| ||| || || || || || || Sbjct 189265 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCGACCTCCAGCGTGATGGTC 189324 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| ||||| |||||||| |||| |||||| Sbjct 189325 TTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 189356 Score = 113 bits (124), Expect = 1e-19 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || |||||||| || || || || || ||||||||||| |||| | || | |||||| Sbjct 189373 AGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 189432 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||| ||||| ||||||||||| || | | ||| |||||||| || Sbjct 189433 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTATCC 189492 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || || || |||| | | |||| ||| || ||||| || || || Sbjct 189493 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCGACCTCAAGGGTGATGGTC 189552 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||||| ||||| || ||||| |||| |||||| || Sbjct 189553 TTGCCAGTGAGGGTTTTCACAAAGATCTGCATATT 189587 Score = 107 bits (118), Expect = 4e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || |||||||| || || || || || ||||||||||| |||| | || | |||||| Sbjct 185531 AGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 185590 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| ||||||||||| || | | ||| |||||||| || Sbjct 185591 TCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTATCC 185650 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || || || |||| | | |||| ||| || || || || || || Sbjct 185651 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCGACCTCCAGCGTGATGGTC 185710 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| ||||| |||||||| |||| |||||| Sbjct 185711 TTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 185742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153570119090147