Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq562 174 1e-38 >seq562 Length=198046 Score = 174 bits (192), Expect = 1e-38 Identities = 174/223 (78%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 44117 CTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGG 44176 ||||| | || ||| || || || ||| |||||| ||||||||||| |||| ||| | Sbjct 185294 CTCAGACGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTATTCGGAGAGGGTG 185353 Query 44177 CGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCT 44236 || | || ||||||||||| ||||||||||||| | ||||||||||| || | |||| Sbjct 185354 CGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGGATACCT 185413 Query 44237 TCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCAC 44295 ||||| ||| ||||| |||| | |||| | ||||||||| || || ||||||| Sbjct 185414 TCCTTATCCTGGATCTTGGCCTTC-ACGTTCTCGATGGTGTCGCTGGGCTCGACCTCCAG 185472 Query 44296 CGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||| || ||||| || |||||||||||||||||||| |||||| Sbjct 185473 CGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATG 185515 Score = 170 bits (188), Expect = 1e-37 Identities = 179/233 (77%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || ||||| | || ||| || || || ||| ||||| ||||||||||| || Sbjct 188670 CATGCCTCCCCTCAGACGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTC 188729 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || ||| ||| | || ||||||||||| ||||||||||||| | ||||||||||| Sbjct 188730 GGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGG 188789 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | |||||||| ||| ||||| |||| | |||| | ||||||||| || | Sbjct 188790 GGGGATGCCTTCCTTATCCTGGATCTTGGCCTTC-ACGTTCTCGATGGTGTCGCTGGGCT 188848 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | ||||||| ||| || ||||| || |||||||||||||||||||| |||||| Sbjct 188849 CGACCTCCAGCGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATG 188901 Score = 167 bits (184), Expect = 2e-36 Identities = 176/229 (77%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || ||||| | || ||| || || || ||| |||||| ||||||||||| |||| | Sbjct 188446 CCTCCCCTCAGGCGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 188505 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| | || ||||||||||| ||||||||||||| | ||||||||||| || Sbjct 188506 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGG 188565 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCAC 44289 | |||||||| ||| ||||| |||| | |||| | ||||||||| || || || Sbjct 188566 ATGCCTTCCTTATCCTGGATCTTGGCCTTC-ACGTTCTCGATGGTGTCGCTGGGCTCGAC 188624 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||| ||| || ||||| || |||||||||||||| ||||| |||||| Sbjct 188625 CTCCAGCGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCATG 188673 Score = 165 bits (182), Expect = 6e-36 Identities = 178/233 (76%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || ||||| | || ||| || || || ||| ||||| ||||||||||| || Sbjct 188898 CATGCCTCCCCTCAGACGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTC 188957 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || ||| ||| | || ||||||||||| ||||||||||||| | ||||||||||| Sbjct 188958 GGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGG 189017 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | |||||||| ||| ||||| |||| | |||| | ||||||||| || | Sbjct 189018 GGGGATGCCTTCCTTATCCTGGATCTTGGCCTTC-ACGTTCTCGATGGTGTCGCTGGGCT 189076 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | ||||||| ||| || ||||| || |||||||||||||| ||||| |||||| Sbjct 189077 CGACCTCCAGCGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCATG 189129 Score = 165 bits (182), Expect = 6e-36 Identities = 178/233 (76%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || ||||| | || ||| || || || ||| ||||| ||||||||||| || Sbjct 189126 CATGCCTCCCCTCAGACGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTC 189185 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || ||| ||| | || ||||||||||| ||||||||||||| | ||||||||||| Sbjct 189186 GGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGG 189245 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | |||||||| ||| ||||| |||| | |||| | ||||||||| || | Sbjct 189246 GGGGATGCCTTCCTTATCCTGGATCTTGGCCTTC-ACGTTCTCGATGGTGTCGCTGGGCT 189304 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | ||||||| ||| || ||||| || |||||||||||||| ||||| |||||| Sbjct 189305 CGACCTCCAGCGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCATG 189357 Score = 161 bits (178), Expect = 7e-35 Identities = 177/233 (76%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || ||||| | || ||| || || || ||| ||||| ||||||||||| || Sbjct 185512 CATGCCTCCCCTCAGACGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTC 185571 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || ||| ||| | || ||||||||||| || |||||||||| | ||||||||||| Sbjct 185572 GGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGATCTGG 185631 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | |||||||| ||| ||||| |||| | |||| | ||||||||| || | Sbjct 185632 GGGGATGCCTTCCTTATCCTGGATCTTGGCCTTC-ACGTTCTCGATGGTGTCGCTGGGCT 185690 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | ||||||| ||| || ||||| || |||||||||||||| ||||| |||||| Sbjct 185691 CGACCTCCAGCGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCATG 185743 Score = 161 bits (178), Expect = 7e-35 Identities = 177/233 (76%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || ||||| | || ||| || || || ||| |||||| ||||||||||| || Sbjct 185740 CATGCCTCCCCTCAGGCGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 185799 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || ||| ||| | || ||||||||||| ||||||||||||| | ||||||||||| Sbjct 185800 GGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGG 185859 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | ||||||||| ||| ||||| |||| | |||| | ||||||||| || | Sbjct 185860 GGGGATACCTTCCTTATCCTGGATCTTGGCCTTC-ACGTTCTCGATGGTGTCGCTGGGCT 185918 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | ||||| | || || ||||| || |||||||| ||||| ||||| |||||| Sbjct 185919 CGACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTTTTCACAAAGATCTGCATG 185971 Score = 150 bits (166), Expect = 1e-31 Identities = 174/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || ||||| | || ||| || || || ||| ||||| ||||||||||| || Sbjct 189354 CATGCCTCCCCTCAGACGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTC 189413 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || ||| ||| | || ||||||||||| ||||||||||||| | ||||||||||| Sbjct 189414 GGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGG 189473 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | |||||||| ||| ||||| |||| | |||| | ||||||||| || | Sbjct 189474 GGGGATGCCTTCCTTATCCTGGATCTTGGCCTTC-ACGTTCTCGATGGTGTCGCTGGGCT 189532 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||||| | || || ||||| || |||||||| ||||| ||||| ||||| Sbjct 189533 CGACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTTTTCACAAAGATCTGCAT 189584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359916003146469