Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq3685 185 1e-41 seq1768 131 2e-25 seq4731 100 4e-16 >seq3685 Length=125217 Score = 185 bits (204), Expect = 1e-41 Identities = 231/314 (74%), Gaps = 7/314 (2%) Strand=Plus/Plus Query 8277 CATCGGGAACTCGGAACGCGGCCAACGGACA---CCCCTTGACGTTGCTACAGACTAGAG 8333 ||||||| || || || ||| ||||| ||||| ||||||||| || || || Sbjct 19137 CATCGGGTACATTAAAAGCCGCCGTGGGACAGGGCCCCTGGACGTTGCTGCACACCAGCC 19196 Query 8334 ACTGAATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCT 8393 ||| | | ||| | |||||||| ||| |||||| || ||||||||||| |||| Sbjct 19197 TCTGCAGGGAGGCGGTGTTGACGATGTTGAAGCCCACGCTGCCTCCGAAGGTGCTCGGCT 19256 Query 8394 TCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCC 8453 |||||||| |||||||||||||| ||| |||| | ||| ||||||||||| || |||| Sbjct 19257 TCCAGTACTCCGGGGAGCAGATGGGGTTTCCCATTAAGCCCTTGAGGGAGAAAGGGGCCC 19316 Query 8454 CCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATC 8513 ||| ||| | || |||| |||||||| |||| | | |||||| |||||||| | | Sbjct 19317 CCATCTCCACCATAGTCTCCCCGAAGATTGCGTCTGTCCTGGGCTTCTCCACCAACAGAC 19376 Query 8514 CGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGC--CCTGAGTTCGGCAGCGAT 8571 | | ||| ||||||||||| || |||| |||||| | | || || || || || || Sbjct 19377 CCGGGTAGAGCTCCACAGCGTCAACGTGTCCGTAGAACTCCTCCAGAATT--GCGGCCAT 19434 Query 8572 CTCCTTTTCTCCTG 8585 ||| || ||||||| Sbjct 19435 CTCTTTCTCTCCTG 19448 Score = 131 bits (144), Expect = 2e-25 Identities = 176/243 (72%), Gaps = 4/243 (2%) Strand=Plus/Plus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 ||||| || | ||||||||| || ||||| ||| || || || | | ||||| Sbjct 21039 ATGAGCCGTGAGGTCTGGAAGAGCCTTTCGTCGTCCCAGTCCGGGTGAACCTCCTTCAGC 21098 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 ||||| ||||| |||||||||||||| |||||||| |||||||||||||| ||||| || Sbjct 21099 ACATCACACACTCTGTTGTGTTCCCTCAGCCAGATGGTGGCGTACATCATCAGCCCGGGG 21158 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 |||||||| || ||||| || || ||||| | || ||||| || | |||||| Sbjct 21159 ACCAGGCCGAAGGCCTCGTGGCCCACAGCAAAGCGGTGAGAGTCGGGAACGTGGGGAGGG 21218 Query 9424 TAGATCATGT--GCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCA 9481 ||| ||| | || ||| || |||||||| | || || |||| || || || | | Sbjct 21219 TAGTGCATTTCGGCGCCT--ACCTCTTTGACTGTTGGTGGGTACACCTCTCCATCCAGGA 21276 Query 9482 TCT 9484 ||| Sbjct 21277 TCT 21279 Score = 89.7 bits (98), Expect = 7e-13 Identities = 200/295 (68%), Gaps = 4/295 (1%) Strand=Plus/Plus Query 8944 CTTACTCGGCCGGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGAGTC 9003 ||||| ||||| || || ||||| |||||||| || || || | | |||||||| || Sbjct 20247 CTTACCCGGCCAGCGATCTGTTTGGTGAACGACTCCACGAGGTTGCCGATGCCGTGC-TC 20305 Query 9004 ATGAG-TATGGAATTGTTGTAGACGAAGTTAACGTAGTCATACTTTGTTTTATCAATCTC 9062 || || ||| ||||| ||||||| | |||| || | | | ||||| | Sbjct 20306 GGGAACTAGGGAGGTGTTGAAGACGAATTCTTTGTAGCTGTAATCCTTCTCCTCAATGTG 20365 Query 9063 AAATGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACG 9122 || || ||||| || | |||||||| ||||| |||| ||||| || || || Sbjct 20366 GAAGCTGTCAGGCATCAGCGGGTGCCAGTGGTACAAGGTGTTGAACTCTGATGCAATGCG 20425 Query 9123 ATTTTGGTACTGGAA-CGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAGCTGAAAAT 9181 || ||||||||||| || | ||| ||||| ||||| | |||| |||| || | Sbjct 20426 GTTCTGGTACTGGAAGCGCTGGTTGAAA-AGCAGCTCGGGATCAAACTTGAGCTTGAAGT 20484 Query 9182 GGTAGCCGCTGAGCTGCTGAACGTATTGCGTCACGATAATGTTGATGGTTTCCCC 9236 |||||||| || ||||| ||||| | | | | ||| |||||||| || || Sbjct 20485 TATAGCCGCTCAGGTGCTGCACGTAATCCTCAATCACAATCTTGATGGTCTCTCC 20539 >seq1768 Length=121181 Score = 131 bits (144), Expect = 2e-25 Identities = 191/270 (71%), Gaps = 0/270 (0%) Strand=Plus/Plus Query 8281 GGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAAT 8340 |||||| ||||| | | | ||||||| |||| |||| || ||||| || | Sbjct 55237 GGGAACACGGAAGTCCACGTATGGACACCACTTGGTGTTGAGGCACACTAGTTTCTTCAG 55296 Query 8341 AGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTA 8400 ||| | | ||||| || ||| || ||||| ||||||||||||||||||||||| Sbjct 55297 AGTGGAAGTTTTGACAATATTGAAGCCGGTCTCTCCCCCGAAGGTGCTGGGCTTCCAGTA 55356 Query 8401 CCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTC 8460 | | |||||||| ||| ||| |||| |||||||| || ||||| ||||| |||| ||| Sbjct 55357 CTCAGGGGAGCAAATGGGGTTTCCCATCAGGCCTTTTAGCGAGAAGGGAGCGCCCATCTC 55416 Query 8461 GAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTA 8520 | || ||||| || || | ||| || || | || |||| || || || | ||| Sbjct 55417 CACCATACTCTCGCCAAATAGATTGTTAGGGCGCGTTTTCTCCAGCAGGATGCCAGGGTA 55476 Query 8521 CAGCTCCACAGCCTCGACGTCTCCGTAAAG 8550 | ||||| ||| || | ||||||||| || Sbjct 55477 GAACTCCAGAGCATCTATGTCTCCGTAGAG 55506 Score = 111 bits (122), Expect = 2e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || || |||||||| | ||||||||||| || ||||| || ||| |||||| Sbjct 57054 TCACCAATGATGATGAGCCTGGTGGTCTGGAAGAGCTGCTCATCGTCCCAGGTGGGATGT 57113 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 ||| ||||| | || || || ||||| || |||| ||||| || ||||||||||| Sbjct 57114 TCTGCCTTCAGGATCTCACAGACTCTGTTATGCTCCCGCAGCCATATGGTGGCGTACATG 57173 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411 |||| || || | |||||||| |||| || |||| |||| ||| | | | || Sbjct 57174 GTGAGGCCCGGCAGGAGGCCAAACACCTCATGGCCGATGACCAGGCGCTTCTCTGGAGGT 57233 Query 9412 ACTTCGGGAGGATAGATCATGTGCACCTGGACGTCT 9447 || | ||| |||||||||||||| |||| ||| Sbjct 57234 ACGTTTTCAGGGTAGATCATGTGCACGGGGACCTCT 57269 >seq4731 Length=49948 Score = 100 bits (110), Expect = 4e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 8361 CGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGT 8420 |||| ||||| | ||| || || ||||||||||||||||| | ||| ||||| || || Sbjct 11875 CGAAGCCCACTTGTCCCCCAAACGTGCTGGGCTTCCAGTAGCTCGGAGAGCAAATAGGGT 11816 Query 8421 TCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGA 8480 || | | ||| ||||| |||||||| || || |||| ||| | |||||||| || || | Sbjct 11815 TCCCGAGGAGCCCTTTAAGGGAGAAGGGGGCACCCATCTCCACCATGCTCTCTCCAAAAA 11756 Query 8481 TGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGT 8540 |||| | |||| || |||| || | |||| || | |||| ||| || | | Sbjct 11755 TGGCCCCCTGGCGGGTTTTCTCCAACATCATGCCGGGATAAAATTCCATAGCATCAATAT 11696 Query 8541 CTCCGTAAAG 8550 | ||||| || Sbjct 11695 CCCCGTAGAG 11686 Score = 87.8 bits (96), Expect = 3e-12 Identities = 117/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || ||||| |||| ||| || ||||||||||| || |||||||| ||| ||||| Sbjct 10450 TCACCGATGATGACGAGGCGCGTGGTCTGGAAGAGCTGCTCGTCGTCCCAGGTGGGATGC 10391 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || ||||| | || ||||||| |||||| |||| ||||| | |||||| ||||| Sbjct 10390 TCCGCCTTCAGGATGTCACACACCCGGTTGTGCTCCCGCAGCCACAGCGTGGCGAACATC 10331 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCA 9394 | || || | ||| || || |||| ||||||| |||| Sbjct 10330 CCCAAACCCGGCAGCAGTCCGAACACCTCCTGACCGATGGCCA 10288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716724849001280