Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq562 149 2e-30 >seq562 Length=198046 Score = 149 bits (164), Expect = 2e-30 Identities = 159/208 (76%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || |||||||| ||||| || || || |||||||| ||||| || || ||| Sbjct 189581 CAGATCTTTGTGAAAACCCTCACTGGCAAGACCATCACCCTTGAGGTCGA--GCCCAGCG 189524 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||||||||||||| || ||||| ||||| || ||||| ||||| || || |||| Sbjct 189523 ACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCAGATCAGC 189464 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| ||||| || ||||| |||||||| | || || |||| || ||| Sbjct 189463 AGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAACA 189404 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || ||||| || || |||||||| Sbjct 189403 TCCAGAAGGAATCCACCCTCCATCTTGT 189376 Score = 145 bits (160), Expect = 2e-29 Identities = 158/208 (76%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || |||||||| ||||| || || || |||||||| ||||| || || ||| Sbjct 185967 CAGATCTTTGTGAAAACCCTCACTGGCAAGACCATCACCCTTGAGGTCGA--GCCCAGCG 185910 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||||||||||||| || ||||| ||||| || ||||| ||||| || || |||| Sbjct 185909 ACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGTATCCCCCCAGATCAGC 185850 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| ||||| || ||||| |||||||| | || || |||| || ||| Sbjct 185849 AGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAACA 185790 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || || |||||||| Sbjct 185789 TCCAGAAGGAGTCCACCCTCCATCTTGT 185762 Score = 145 bits (160), Expect = 2e-29 Identities = 158/208 (76%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || ||||| || || || ||||| || ||||| || || ||| Sbjct 188897 CAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACGCTGGAGGTCGA--GCCCAGCG 188840 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||||||||||||| || ||||| ||||| || ||||| ||||| || || |||| Sbjct 188839 ACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCAGATCAGC 188780 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| ||||| || ||||| |||||||| | || || |||| || ||| Sbjct 188779 AGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAACA 188720 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || ||||| || || |||||||| Sbjct 188719 TCCAGAAGGAATCCACCCTCCATCTTGT 188692 Score = 140 bits (154), Expect = 8e-28 Identities = 157/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || ||||| || || || ||||| || ||||| || || ||| Sbjct 185511 CAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACGCTGGAGGTCGA--GCCCAGCG 185454 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||||||||||||| || ||||| ||||| || ||||| ||||| || || |||| Sbjct 185453 ACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGTATCCCCCCAGATCAGC 185394 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| ||||| || ||||| |||||||| | || || |||| || ||| Sbjct 185393 AGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGAATACAACA 185334 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || || |||||||| Sbjct 185333 TCCAGAAGGAGTCCACCCTCCATCTTGT 185306 Score = 140 bits (154), Expect = 8e-28 Identities = 157/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || ||||| || || || ||||| || ||||| || || ||| Sbjct 189125 CAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACGCTGGAGGTCGA--GCCCAGCG 189068 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||||||||||||| || ||||| ||||| || ||||| ||||| || || |||| Sbjct 189067 ACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCAGATCAGC 189008 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| ||||| || ||||| |||||||| | || || |||| || ||| Sbjct 189007 AGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAACA 188948 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || ||||| || || |||||||| Sbjct 188947 TCCAGAAGGAATCCACCCTCCATCTTGT 188920 Score = 140 bits (154), Expect = 8e-28 Identities = 157/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || ||||| || || || ||||| || ||||| || || ||| Sbjct 189353 CAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACGCTGGAGGTCGA--GCCCAGCG 189296 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||||||||||||| || ||||| ||||| || ||||| ||||| || || |||| Sbjct 189295 ACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCAGATCAGC 189236 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| ||||| || ||||| |||||||| | || || |||| || ||| Sbjct 189235 AGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAACA 189176 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || ||||| || || |||||||| Sbjct 189175 TCCAGAAGGAATCCACCCTCCATCTTGT 189148 Score = 136 bits (150), Expect = 1e-26 Identities = 156/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || ||||| || || || ||||| || ||||| || || ||| Sbjct 185739 CAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACGCTGGAGGTCGA--GCCCAGCG 185682 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||||||||||||| || ||||| ||||| || ||||| ||||| || || |||| Sbjct 185681 ACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCAGATCAGC 185622 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| |||||||| | || || |||| || ||| Sbjct 185621 AGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAACA 185562 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || ||||| || || |||||||| Sbjct 185561 TCCAGAAGGAATCCACCCTCCATCTTGT 185534 Score = 136 bits (150), Expect = 1e-26 Identities = 156/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || ||||| || || || ||||| || ||||| || || ||| Sbjct 188669 CAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACGCTGGAGGTCGA--GCCCAGCG 188612 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||||||||||||| || ||||| ||||| || ||||| ||||| || || |||| Sbjct 188611 ACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCAGATCAGC 188552 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| ||||| || ||||| |||||||| | || || |||| || ||| Sbjct 188551 AGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAACA 188492 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || || |||||||| Sbjct 188491 TCCAGAAGGAGTCCACCCTCCATCTTGT 188464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203469675478658