Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haplochromis_20burtoni_20[refseq_20GCF_5F000239415.1_202011-12-22] 8,001 sequences; 831,411,547 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq2861 98.7 1e-15 seq230 98.7 1e-15 >seq2861 Length=8583 Score = 98.7 bits (108), Expect = 1e-15 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 17226 GGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGG 17285 |||| | || ||||| ||||| || ||||||||||| || ||||| ||||||||||||| Sbjct 5886 GGTCCTTGATGTACGTGTCGATCAGCAGGCTGTACATCTCTGAGTGGATGTTCTCCATGG 5827 Query 17286 CTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCC 17332 | ||||| || ||||| || || ||||| |||| || || |||||| Sbjct 5826 CGATCTGGAAACCGTAGAAACACCGGGCCTCCGTTACCTGCACTTCC 5780 Score = 96.9 bits (106), Expect = 4e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||||||||||||||| || ||||| || || |||| ||||||||| |||| |||| Sbjct 6308 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 6249 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | | ||| || || ||||||||||| || || ||||| || ||||| || | ||||| | Sbjct 6248 TCAGCCAGAAGATGGCGGCGAACGAACCCGAGAAGAAGATCCCCTCCACAGCGGCAAAGG 6189 Query 17106 C 17106 | Sbjct 6188 C 6188 >seq230 Length=973959 Score = 98.7 bits (108), Expect = 1e-15 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 17226 GGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGG 17285 |||| | || ||||| ||||| || ||||||||||| || ||||| ||||||||||||| Sbjct 833060 GGTCCTTGATGTACGTGTCGATCAGCAGGCTGTACATCTCTGAGTGGATGTTCTCCATGG 833119 Query 17286 CTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCC 17332 | ||||| || ||||| || || ||||| |||| || || |||||| Sbjct 833120 CGATCTGGAAACCGTAGAAACACCGGGCCTCCGTTACCTGCACTTCC 833166 Score = 96.9 bits (106), Expect = 4e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||||||||||||||| || ||||| || || |||| ||||||||| |||| |||| Sbjct 832638 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 832697 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | | ||| || || ||||||||||| || || ||||| || ||||| || | ||||| | Sbjct 832698 TCAGCCAGAAGATGGCGGCGAACGAACCCGAGAAGAAGATCCCCTCCACAGCGGCAAAGG 832757 Query 17106 C 17106 | Sbjct 832758 C 832758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517493838970680