Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haplochromis_20burtoni_20[refseq_20GCF_5F000239415.1_202011-12-22] 8,001 sequences; 831,411,547 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq50 109 4e-19 >seq50 Length=2598561 Score = 109 bits (120), Expect = 4e-19 Identities = 125/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 101759 TGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCC 101818 || ||||||||| | || | ||| |||||||| || ||||| || ||||| ||||| ||| Sbjct 118221 TGTGCAATCATGTAGGTAAGAAGTGAATAGCTGGCGATGTTGAAAGGCACCCCTAATCCC 118162 Query 101819 ATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAATTGA 101878 ||||||||||| | || ||||| ||||| || |||| || || || || || || || Sbjct 118161 ATATCAGCTGAGCGCTGGTACAGCTGACACGACAGCTCGCCGTCGCACACGTAGAACTGG 118102 Query 101879 CTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACA 101926 | | | | || || || |||| | |||| |||| | ||||| |||| Sbjct 118101 CAGAGTGCGTGGCAGGGGGGCAGCGCCATCCTAGGGAGGTCTGCAACA 118054 Score = 93.3 bits (102), Expect = 3e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 102038 TATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTTCATCT 102097 || ||||| || || ||||||||||| || |||||||||||||| || || || || ||| Sbjct 117410 TACTCTGCACCAAAGTGCCTCCACTGGAAACCATACACAGGTCCTAGGTCACCCTCTTCT 117351 Query 102098 CTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAATGTGC 102157 |||||| || ||||| || || | ||| | ||| || || |||||||| || | | Sbjct 117350 CTGTCAGTGAACCCAAGGTTGTCCAGAAAGTCCCGAGACCCGTTGGCATCCCAGATTTTC 117291 Query 102158 ACGCCAGCTGCTGATAGCTCTTTG 102181 || || | |||| ||||| ||| Sbjct 117290 ACTCCTTTTTCTGACAGCTCCTTG 117267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361215973605251