Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haplochromis_20burtoni_20[refseq_20GCF_5F000239415.1_202011-12-22] 8,001 sequences; 831,411,547 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq2861 129 6e-25 seq230 129 6e-25 seq19 109 6e-19 >seq2861 Length=8583 Score = 129 bits (142), Expect = 6e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091 || |||||| |||||||||| || || || ||||| ||||||| ||||| |||||| Sbjct 6173 GGAGAGCGCGTGGTGGCCTTTGCCGCTGTGGAGGGGATCTTCTTCTCGGGTTCGTTCGCC 6232 Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151 ||||| || ||||| ||||| | ||||| |||||||||||||| ||| |||||||||| Sbjct 6233 GCCATCTTCTGGCTGAAGAAGAGAGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTC 6292 Query 117152 ATCTCCAGGGACGAGG 117167 ||| ||| ||||||| Sbjct 6293 ATCAGCAGAGACGAGG 6308 Score = 114 bits (126), Expect = 1e-20 Identities = 104/127 (82%), Gaps = 3/127 (2%) Strand=Plus/Plus Query 116685 AGGTGGACCTGTCCAAGGACACG-AGCGACTGGGAGCGCTTGAACGACAACGAGCGCCAT 116743 ||||||| |||||||||||| | ||| ||||||| | |||| ||| | |||||| | Sbjct 5561 AGGTGGATCTGTCCAAGGACCTGCAGC-ACTGGGATGCCATGAAGGACGAAGAGCGCTAC 5619 Query 116744 TTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTG 116803 |||||| |||||| ||||||| || ||||||||||||||||||||||| ||||| ||| Sbjct 5620 TTCATCTCCCACGTGTTGGCCTTCTTTGCCGCCAGCGACGGCATCGTCAATGAGAACCTG 5679 Query 116804 GTCGAGC 116810 || |||| Sbjct 5680 GT-GAGC 5685 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/117 (79%), Gaps = 4/117 (3%) Strand=Plus/Plus Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 ||| ||||| ||| ||||| |||||||| | ||||| ||||| |||||||| || || Sbjct 5762 GGTGGAGCGCTTCATGCAGGAAGTGCAGGTAACGGAGGCCCGGTGTTTCTACGGTTTCCA 5821 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACC--CTCATCGACACGTAC 116917 |||||||||||||||| | ||||| || ||||| | || || |||||||||||| Sbjct 5822 GATCGCCATGGAGAACATCCACTCAGAGATGTA--CAGCCTGCTGATCGACACGTAC 5876 >seq230 Length=973959 Score = 129 bits (142), Expect = 6e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091 || |||||| |||||||||| || || || ||||| ||||||| ||||| |||||| Sbjct 832773 GGAGAGCGCGTGGTGGCCTTTGCCGCTGTGGAGGGGATCTTCTTCTCGGGTTCGTTCGCC 832714 Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151 ||||| || ||||| ||||| | ||||| |||||||||||||| ||| |||||||||| Sbjct 832713 GCCATCTTCTGGCTGAAGAAGAGAGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTC 832654 Query 117152 ATCTCCAGGGACGAGG 117167 ||| ||| ||||||| Sbjct 832653 ATCAGCAGAGACGAGG 832638 Score = 114 bits (126), Expect = 1e-20 Identities = 104/127 (82%), Gaps = 3/127 (2%) Strand=Plus/Minus Query 116685 AGGTGGACCTGTCCAAGGACACG-AGCGACTGGGAGCGCTTGAACGACAACGAGCGCCAT 116743 ||||||| |||||||||||| | ||| ||||||| | |||| ||| | |||||| | Sbjct 833385 AGGTGGATCTGTCCAAGGACCTGCAGC-ACTGGGATGCCATGAAGGACGAAGAGCGCTAC 833327 Query 116744 TTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTG 116803 |||||| |||||| ||||||| || ||||||||||||||||||||||| ||||| ||| Sbjct 833326 TTCATCTCCCACGTGTTGGCCTTCTTTGCCGCCAGCGACGGCATCGTCAATGAGAACCTG 833267 Query 116804 GTCGAGC 116810 || |||| Sbjct 833266 GT-GAGC 833261 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/117 (79%), Gaps = 4/117 (3%) Strand=Plus/Minus Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 ||| ||||| ||| ||||| |||||||| | ||||| ||||| |||||||| || || Sbjct 833184 GGTGGAGCGCTTCATGCAGGAAGTGCAGGTAACGGAGGCCCGGTGTTTCTACGGTTTCCA 833125 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACC--CTCATCGACACGTAC 116917 |||||||||||||||| | ||||| || ||||| | || || |||||||||||| Sbjct 833124 GATCGCCATGGAGAACATCCACTCAGAGATGTA--CAGCCTGCTGATCGACACGTAC 833070 >seq19 Length=3626725 Score = 109 bits (120), Expect = 6e-19 Identities = 93/115 (81%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 || || ||||| || ||||||||| | ||||| || ||||| ||||| || |||| ||| Sbjct 2020091 GAACCTCTGCTCCGAGAGAACCCCAGGCGGTTTGTCATTTTTCCCATCCAGTACCGAGAC 2020150 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGG 116690 || ||| ||||||||| ||||| |||| || ||||||||||| |||||||||| Sbjct 2020151 ATCTGGAAGATGTACAAACAGGCCCAGGCCTCTTTCTGGACCGTGGAGGAGGTGG 2020205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515167671639760