Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haplochromis_20burtoni_20[refseq_20GCF_5F000239415.1_202011-12-22] 8,001 sequences; 831,411,547 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq113 113 4e-20 >seq113 Length=1687717 Score = 113 bits (124), Expect = 4e-20 Identities = 303/453 (67%), Gaps = 9/453 (2%) Strand=Plus/Plus Query 133511 GGCCAGCTCGCAGCTAGCCTCCAAAGCGGCAAAGTAAATGGTTTCCGCGAT-TGAATAGT 133569 ||||||||||||||| || |||||||||||| | || || || || ||| || || || Sbjct 900205 GGCCAGCTCGCAGCTCGCTTCCAAAGCGGCATAATACATAGTCTCAAAGATCTGGAT-GT 900263 Query 133570 TGACGAACCTG-GCATCGTCGCTATCGTAGGCGATGTCG-AGAAGAACAAACGCGTCGGC 133627 ||| | | || || ||| ||| || ||| ||| || | ||| | || || || || Sbjct 900264 TGA-GCAGTTGAGCCTCGGGGCTTTCAAAGG-GATAACGCATAAGGATGAAGGCATCAGC 900321 Query 133628 CAAACCCTGTATGCCGACGCCGATGGGTCGATGTTTTTTATTGCTCCTCTCCGACTCGGC 133687 ||| ||||| | |||| || || || | || | || |||| | || | Sbjct 900322 CAATCCCTGGACCCCGATTCCTATCGGCCTGTGGCGCATGTTCGACCTCCTGGCTTCTTC 900381 Query 133688 CGTGGGATAGTGGTTGACGTCGATGATCTTGTTGAGATTGCGGACGATAATTTTAGTCAA 133747 | || |||| ||||| |||||| | |||||| | || | ||| || | ||| |||| Sbjct 900382 CACCGGGTAGTAGTTGATGTCGATAACCTTGTTCAAGTTCCTGACAATTACTTTGGTCAC 900441 Query 133748 ATGTTTCAGCAAAACATAGTCAAATGTCTTGGCGTCGACGTCGACGCACTTGTTGACGGC 133807 | || | ||||| | ||| || | || |||| || |||||| || Sbjct 900442 GGATGCCAATTTTTTAAAGTCATAAGTCC--GCTCAGGGGT-GACGTACATGTTGAGAGC 900498 Query 133808 AATACTGGCTAGATTACAAACGGCCGTCTCGTTCTCGTCGCAATACTGGACGATCTCGGC 133867 | | ||| ||||| ||||| ||| ||||| || | |||| |||||| || | Sbjct 900499 GACAGAGGCCAGATTGCAAACCGCCACCTCGTCCTTGCTAGTGTACTCGACGATTTCCGT 900558 Query 133868 GCAGAGGTTGCTGCATTTGATGGTGCCCAAAtttttttGATTGCTAAAGTTATTGCAATG 133927 ||||||||||||||| ||||||||||||| ||| | || ||||| | ||||| Sbjct 900559 GCAGAGGTTGCTGCACTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGC 900618 Query 133928 ATCCTTGTATAGCATGTACGGCCCGCCGGTTTC 133960 ||| ||||| | |||||||||| |||||||| Sbjct 900619 ATCTTTGTAGACCATGTACGGCGTCCCGGTTTC 900651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433788096248692