Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haplochromis_20burtoni_20[refseq_20GCF_5F000239415.1_202011-12-22] 8,001 sequences; 831,411,547 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq113 473 1e-128 seq47 120 3e-22 >seq113 Length=1687717 Score = 473 bits (524), Expect = 1e-128 Identities = 1067/1595 (67%), Gaps = 41/1595 (3%) Strand=Plus/Plus Query 22409 TCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGAAAC 22468 || ||||||| || | | |||| ||||||| ||| || |||| || | |||||| Sbjct 899888 TCATTCCACAGGCCCCTCTCTGTCAGGTCTTTGAGCAGGTGGGGGTTGACGATCTGAAAC 899947 Query 22469 TCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTG 22528 || || || | || ||||| ||| |||||| |||| | | |||| || || ||| Sbjct 899948 TCCCCCGAGAGCACCCGGCGGGTGTAGATGTTGCTTGTGTAGGCCTCGATGGACTCGTTG 900007 Query 22529 TTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTC 22588 || ||||| ||||| ||||| || || || ||||| || | || ||| || ||| ||| Sbjct 900008 TTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATTGGGGACAGCAGCAGGCTGTTCCTC 900067 Query 22589 AAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGACGGCGTC 22648 | ||| || || | || || ||| |||| | |||||||||||| || | |||||| Sbjct 900068 ACGCCATGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGGTCCGTTGGCGTC 900127 Query 22649 ACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTCGTACGTT 22708 || |||||||| ||||| || | | ||| |||| |||| |||||||||||| Sbjct 900128 ---TTCTCCCACATGTCGTACTGGAGAATGCCCTTACTCACCGGCGAGCCTTCGTACGTC 900184 Query 22709 TCGTACGGACCATATATC-GCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATAT 22767 ||||| | ||| | || ||||| || ||||||||||| ||||| ||| | ||||| || Sbjct 900185 TCGTAGGTGCCA-AGCTCGGCGGCCAGCTCGCAGCTCGCTTCCAAAGCGGCATAATACAT 900243 Query 22768 AGTCTCGAAGATTT---TCTTGTTCAATTCGGCGGCGGCGACGCTTTCGTACGGCATACG 22824 |||||| ||||| | | ||| || || || ||| |||||| | || ||| Sbjct 900244 AGTCTCAAAGATCTGGATGTTGAGCAGTTGAGCCTCGG---GGCTTTCAAAGGGATAACG 900300 Query 22825 CATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAG 22884 ||| | | ||| || || |||| ||||| || || || || ||||| | || || Sbjct 900301 CATAAGGATGAAGGCATCAGCCAATCCCTGGACCCCGATTCCTATCGGCCTGTGGCGCAT 900360 Query 22885 ATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTT 22944 |||||| | || || || || || | || ||||| |||||||||| Sbjct 900361 GTTCGACCTCCTGGCTTCTTCCACCGGGTAGTAGTTGATGTCGATAACCTTGTTCAAGTT 900420 Query 22945 TCTGGTCACAAT---TTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGAT-- 22999 ||| ||||| ||| || | | |||||| ||| | ||| | Sbjct 900421 CCTG---ACAATTACTTTGGTCACGGATGCCAATTTTTTAAAGTCATAA--GTCCGCTCA 900475 Query 23000 TGTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTG 23059 | || || |||||| |||| ||||| |||||||| || ||||||||||| ||| Sbjct 900476 GGGGTGACGTACATGTTGAGAGCGACAGAGGCCAGATTGCAAACCGCCACCTCGTCCTTG 900535 Query 23060 GACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTC 23119 |||||||| || ||||| || || || ||||| ||||| || ||||||| ||| | Sbjct 900536 CTAGTGTACTCGACGATTTCCGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGATTCTGC 900595 Query 23120 TGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACC 23179 |||||||| || | ||||| | ||| ||||||| |||||||||||| || || || | Sbjct 900596 TGGTTGCTCTTCCTGTTGCAGGCATCTTTGTAGACCATGTACGGCGTCCCGGTTTCTGTC 900655 Query 23180 TGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGT---GAACACGTCGCACGTACCTG 23236 |||||||||||||| || ||| | |||||| | ||||| ||| ||| Sbjct 900656 TGCGACTCGATGATTGCATACCATAGCTGCTGAGCCTTCACCACACGCTTCAC---CCTC 900712 Query 23237 CCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGG 23296 || || | ||| || | ||| | | ||||| || | || | || || |||| Sbjct 900713 CCCTCCTTCTCATATCTGGTGTAGAGTTCTTCAAACTCCTCCCCCCAGCACTCATCCAGC 900772 Query 23297 CCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATA 23356 ||||| | | ||||||||| || ||| | || || || || || |||| Sbjct 900773 CCGGGGCAGTCGGCCGGACACATCAGGGACCAGTCTTCGTTGTTCTCCACCCGCTTCATG 900832 Query 23357 AAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCG 23416 || || || || ||||| || ||||||||||| || | ||| ||| |||||| || || Sbjct 900833 AAGAGGTCAGGGATCCACAGGGCGTAGAACAGGTCCCTGGCTCGCTGCTCCTCCTTTCCC 900892 Query 23417 GTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACG 23476 |||||||| |||| |||| ||||| ||||| || ||||| ||||| ||||| | | Sbjct 900893 GTGTTCTTCTTCAGCTCCAGGAAGTCAAACACATCGAAGTGCCAGGGCTCCAGGTACATG 900952 Query 23477 GCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTAC 23536 || || ||||| ||||| || ||||| |||||||| || ||||| || ||||||||||| Sbjct 900953 GCGAAGGCGCCGGGTCTTTTGTTGCCCCCCTGATCAACATAACGCGCTGTGTTGTTGTAA 901012 Query 23537 ACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCA---CACTCGAA 23593 || || | ||| || ||||| |||||||| ||| ||| || | ||| Sbjct 901013 ACCCTCAACATTGGGACGAGCCCGTTGGAACAGCCATTGGTGCCGGCGATGTAGCTC--- 901069 Query 23594 CCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATC 23653 || | | || || | | || | || || ||||| | ||||| || || | Sbjct 901070 CCCGTGGATCTAATGCAGCTGACTGCCACGCCAATCCCTCCAGCTGATTTGGAGATGAGG 901129 Query 23654 GCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAG 23713 ||||| || ||||| ||||||||||| |||||||||||||| || || | |||| || | Sbjct 901130 GCGCAATGCTTCAGCGTGTCGTAGATCCCCTCGATGCTGTCATCCTTCATGGCGAGCAGG 901189 Query 23714 AAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGC 23773 || || |||| |||| || || | || ||| || |||||| |||||| Sbjct 901190 AAGCAGCTGGACAGCTGCGGCCTGTTGGTTCCAGCATTGAAGAGGGTCGGGGAGGCGTGG 901249 Query 23774 GTAAAGTATCCA-TTC---GACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTC 23829 || || ||| ||| |||| || ||||| || |||||| | || || || ||| Sbjct 901250 GTGAA----CCACTTCTCTGACAGCAGGTTGTAGGTCTCGATGACTGCTTCGATATCCGT 901305 Query 23830 TCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCC 23889 ||||| || || | || || | ||| | ||||| || || | ||| | ||| Sbjct 901306 CCCGTGGATTCCCACAGCCACCCTCATGAGCATGTGCTGCGGACGCTCAGCTACTTTGCC 901365 Query 23890 GTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAA 23949 || || || | ||| || || || | || || || || ||||| ||| ||| || Sbjct 901366 ATTGATCTTTAGCAGGTAGGAGCGCTCCAGAGTCTTGAAGCCAAAGAAGTTGTAGGAGAA 901425 Query 23950 GTCACGATCGTGCACTATGGCCGAATTCAAACGGT 23984 || | || | | ||||||||| || | |||| Sbjct 901426 ATCTCTGTCATAGATTATGGCCGAGTTAAGGCGGT 901460 >seq47 Length=2629205 Score = 120 bits (132), Expect = 3e-22 Identities = 120/156 (77%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 23340 TTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGC 23399 |||| || || |||||||||| || || ||||| | ||| | ||||| || || || | Sbjct 775761 TTTCCACTCGCTTCATAAAAAGGTCTGGGATCCACAAGGCGAAAAACAGGTCCCGCGCCC 775820 Query 23400 GCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCC 23459 | ||| ||||| || |||||||| ||||| |||||||| || ||||| || | ||||| Sbjct 775821 TCTGCTCTTCTTTACCCGTGTTCTTCTTCAACTCCAAAAACTCAAACACATCAGAATGCC 775880 Query 23460 ACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495 ||||||||||||| | || ||||| || || |||| Sbjct 775881 ACGGCTCGAGGTACATAGCGAACGCCCCAGGCCTCT 775916 Score = 105 bits (116), Expect = 6e-18 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 23047 CACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGT 23106 |||||| |||||| |||||||||||| || || || || |||||||| | || || || Sbjct 775272 CACCTCATCTTTGCTCGTGTACTCTACGATCTCTGTGCACAGATTGCTGGATTTGATGGT 775331 Query 23107 GCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGT 23166 ||||| || ||| || || |||| ||||| | ||||||||| | |||||| || || Sbjct 775332 GCCCAGGTTTTGCTGATTACTCTTTCTGTTGCAGGCATCCTTGTAAACCATGTATGGTGT 775391 Query 23167 GCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACA 23204 || || || ||||||||| ||||| || ||||| Sbjct 775392 ACCAGTTTCTGTCTGCGACTCAATGATGGCGTACCACA 775429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445721817787920