Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haplochromis_20burtoni_20[refseq_20GCF_5F000239415.1_202011-12-22] 8,001 sequences; 831,411,547 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq113 399 3e-106 seq47 100 4e-16 >seq113 Length=1687717 Score = 399 bits (442), Expect = 3e-106 Identities = 1266/1952 (65%), Gaps = 39/1952 (2%) Strand=Plus/Plus Query 62325 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTA 62384 ||||| ||||| |||||||| | ||||| || | || | || || || ||||| Sbjct 899876 TTCTTCATCTCCTCATTCCACAGGCCCCTCTCTGTCAGGTCTTTGAGCAGGTGGGGGTTG 899935 Query 62385 ACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 62444 || | || || || || || | || | || ||||| || || || || || | || Sbjct 899936 ACGATCTGAAACTCCCCCGAGAGCACCCGGCGGGTGTAGATGTTGCTTGTGTAGGCCTCG 899995 Query 62445 ACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 62504 | ||||| || || |||| || || || || || || || ||||| || | || || Sbjct 899996 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATTGGGGACAGCAGC 900055 Query 62505 AAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGA 62564 | || || || | || | | | ||| || || || || | | ||| | ||| || Sbjct 900056 AGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGG 900115 Query 62565 TCCGACGG-------TACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTA 62617 |||| || | | ||| || || ||||| || ||||| | Sbjct 900116 TCCGTTGGCGTCTTCTCCCACATGTCG-------TACTGGAGAATGCCCTTACTCACCGG 900168 Query 62618 CGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAA 62677 ||| ||| | || || || || | || || | || || | || ||||| || || Sbjct 900169 CGAGCCTTCGTACGTCTCGTAGGTGCCAAGCTCGGCGGCCAGCTCGCAGCTCGCTTCCAA 900228 Query 62678 TGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATC 62737 || | ||||| || || |||||||||| | || || ||| || || ||||| || Sbjct 900229 AGCGGCATAATACATAGTCTCAAAGATCTGGATGTTGAGCAGTTGAGCCTCGGGGCTTTC 900288 Query 62738 AAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGG 62797 ||| |||||| | || || || || || || ||||| || || || || || || || Sbjct 900289 AAAGGGATAACGCATAAGGATGAAGGCATCAGCCAATCCCTGGACCCCGATTCCTATCGG 900348 Query 62798 TCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAAT 62857 || || | | | || || | |||||| | || || || || || || |||| Sbjct 900349 CCTGTGGCGCATGTTCGACCTCCTGGCTTCTTCCACCGGGTAGTAGTTGATGTCGATAAC 900408 Query 62858 TTTATTGAGATTTCTGACAATTACTTTGACCAC--ATCCTTCAGTTTGAGAAAATCAAAT 62915 || || | || ||||||||||||||| ||| || | || ||| ||| ||| | Sbjct 900409 CTTGTTCAAGTTCCTGACAATTACTTTGGTCACGGATGC--CAATTTTTTAAAGTCATAA 900466 Query 62916 ---CGCCCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACC 62972 ||| || | || ||||||| | || ||||| |||||||| || || || ||| Sbjct 900467 GTCCGCTCAGGGGTGACGTACATGTTGAGAGCGACAGAGGCCAGATTGCAAACCGCCACC 900526 Query 62973 TCATTAGCATCCGCATATTGTATT-----ATCTCAGTGCAAAGATTACTACACTTGATAG 63027 || | | | | || |||| | || || ||||| || || || |||||||| | Sbjct 900527 TCGTC--CTTGC---TAGTGTACTCGACGATTTCCGTGCAGAGGTTGCTGCACTTGATGG 900581 Query 63028 TTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAG 63087 | || | ||| || || || ||||| |||| || ||||| || || | ||| | || | Sbjct 900582 TGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCATCTTTGTAGACCATGTACGGCG 900641 Query 63088 TACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATA 63146 | || ||||| |||| || || || || || | ||| | | || ||||||| | | | Sbjct 900642 TCCCGGTTTCTGTCTGCGACTCGATGATTGCATACCATAGCTGCT-GAGCCTTCACCACA 900700 Query 63147 GATTTGTATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAA 63206 || |||| || | || ||| || || | | ||| ||||| || ||||| Sbjct 900701 CGCTTCACCCTCCCCTCCTTCTCATATCTGGTGTAGAGTTCTTCAAACTCCTCCCCCCAG 900760 Query 63207 ACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC 63266 | |||| | || || || |||||||||||| ||||| ||| ||| | || | Sbjct 900761 CACTCATCCAGCCCGGGGCAGTCGGCCGGACACATCAGGGACCAGTCTTCGTTGTTCTCC 900820 Query 63267 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGT 63326 || || ||||| ||||| ||||| ||||| || || || || || || | || || Sbjct 900821 ACCCGCTTCATGAAGAGGTCAGGGATCCACAGGGCGTAGAACAGGTCCCTGGCTCGCTGC 900880 Query 63327 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 63386 ||||| ||||| || ||||| || || || ||||| | | | ||| | ||||| || Sbjct 900881 TCCTCCTTTCCCGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACATCGAAGTGCCAGGGC 900940 Query 63387 TCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCG 63446 |||| ||| ||||| | | || || | |||||| || |||||||| | || | || Sbjct 900941 TCCAGGTACATGGCGAAGGCGCCGGGTCTTTTGTTGCCCCCCTGATCAACATAACGCGCT 901000 Query 63447 GTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAG 63506 ||||| || ||||| ||||||||||| | | ||||| || |||||||| |||| | Sbjct 901001 GTGTTGTTGTAAACCCTCAACATTGGGACGAGCCCGTTGGAACAGCCATTGGTGCCGGCG 901060 Query 63507 ATATAGCCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTA 63566 || |||| || ||| | ||| || | || | || || || || || ||| Sbjct 901061 ATGTAGCTCCCCGTGGATCTAATGCAGCTGACTGCCACGCCAATCCCTCCAGCTGATTTG 901120 Query 63567 GAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATG 63626 ||||| | ||||| | || | |||||| ||||| || || ||||| ||||| ||||| Sbjct 901121 GAGATGAGGGCGCAATGCTTCAGCGTGTCGTAGATCCCCTCGATGCTGTCATCCTTCATG 901180 Query 63627 TTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGA 63686 || || || ||||| |||| || | | | ||||| ||||| || | ||| || Sbjct 901181 GCGAGCAGGAAGCAGCTGGACAGCTGCGGCCTGTTGGTTCCAGCATTGAAGAGGGTCGGG 901240 Query 63687 GAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATA 63746 || ||||| || ||||| || || || || || ||||| ||||| || ||| || ||| Sbjct 901241 GAGGCGTGGGTGAACCACTTCTCTGACAGCAGGTTGTAGGTCTCGATGACTGCTTCGATA 901300 Query 63747 TCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATT 63806 ||| || ||||| || || || | ||| | ||||||||| || | ||| | | | Sbjct 901301 TCCGTCCCGTGGATTCCCACAGCCACCCTCATGAGCATGTGCTGCGGACGCTCAGCTACT 901360 Query 63807 TTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTAT 63866 ||| || || || | || |||||| |||| ||| || || ||||| ||||||| Sbjct 901361 TTGCCATTGATCTTTAGCAGGTAGGAGCGCTCCAGAGTCTTGAAGCCAAAGAAGTTGTAG 901420 Query 63867 GAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTTATATTTGTTAACTATA 63926 || || |||| || || || || |||| || || || || | | ||| || Sbjct 901421 GAGAAATCTCTGTCATAGATTATGGCCGAGTTAAGGCGGTCTTTGTTTGCAAGAACAATG 901480 Query 63927 TCCATGGTAATACTTGAAATAATCGGAGAATGTTTCCCATTTTTA--GGATTAACATAGT 63984 || | || | ||||| || |||| | || | | || | || || | |||| Sbjct 901481 TCGAGTGTGTCTTTCGAAATCAT-GGAGGA-GTGGCGTTTGTTCAGGGGGTTGATGTAGT 901538 Query 63985 TGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATA 64044 || | | |||||||| || || || || | || || || || ||||| | || || | Sbjct 901539 TGTACAGGTCCTCCATGACGTCGCTGAACACCTTCTTCGTCTCTTTGTGCAAGTTAGAGA 901598 Query 64045 TGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTA 64104 ||| || | || || || ||||| || || || | | || || |||||| || | Sbjct 901599 CGGCGATGCGTGCTGCGAGGATGGCGTAGTCGGGGTACTTGGTTGTGAGAGTGGCAGCGA 901658 Query 64105 TTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAA 64164 | || || ||||| ||||| | || || || || || || | || | || || || | Sbjct 901659 TCTCCGCCGCCAGCGTGTCGAGCTCCACAGTGGTGACGCCGCTGTACAAACCCTGGATGA 901718 Query 64165 CCTTCATAGCTATTTTAATAGGATCTATATGATCCGTGTTTAAGCCATAGCACAATTTTC 64224 ||||||| | || | || || | | ||| |||| | || ||||| || ||| Sbjct 901719 CCTTCATCGTGATCTGGGCTGGGTCCACAAACTCCATGTTGAGTCCGTAGCA-AAGCTTC 901777 Query 64225 T-AATACGAGACGTGATTTTATCAAACATGAC 64255 | || ||||| |||||||| || |||||||| Sbjct 901778 TGGATGCGAGATGTGATTTTGTCGAACATGAC 901809 >seq47 Length=2629205 Score = 100 bits (110), Expect = 4e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 62997 ATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTG 63056 ||||| ||||| ||||| || | ||||| || || | ||||| |||||||||||| || Sbjct 775300 ATCTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGGTTTTGCTGATTACTCTTTCTG 775359 Query 63057 TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATC 63116 || || |||||||| |||| ||| |||| ||||||||||| |||| || || || || Sbjct 775360 TTGCAGGCATCCTTGTAAACCATGTATGGTGTACCAGTTTCTGTCTGCGACTCAATGATG 775419 Query 63117 GCTTTCCA 63124 || | ||| Sbjct 775420 GCGTACCA 775427 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 63663 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63722 || || || || || | |||||||||||||| || ||||| || || || || | ||| Sbjct 776430 GTGCCAGCGTTGAACAGTGTAGGAGAAGCGTGAGTGAACCACTTCTCTGACAGCAAGTTG 776489 Query 63723 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63782 || |||||||| |||| || || || | || |||||| || |||| || | ||||| | Sbjct 776490 TAGGTCTCAATGGCTGCATCAATGTCACCTTTATGAATCCCGACTGACACTCTCATTAGC 776549 Query 63783 ATGTGCTGAGGTC 63795 |||||||| |||| Sbjct 776550 ATGTGCTGGGGTC 776562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629754610367280