Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haplochromis_20burtoni_20[refseq_20GCF_5F000239415.1_202011-12-22] 8,001 sequences; 831,411,547 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq113 136 4e-27 seq2861 84.2 2e-11 seq230 84.2 2e-11 >seq113 Length=1687717 Score = 136 bits (150), Expect = 4e-27 Identities = 929/1479 (63%), Gaps = 17/1479 (1%) Strand=Plus/Plus Query 37075 TTCTTTATGTCATTATTCCACATATTTCTACTTATTAGTTCTCTCAATAGGTGTGGATTT 37134 ||||| || || | |||||||| || | | || ||| | | ||||| || || Sbjct 899876 TTCTTCATCTCCTCATTCCACAGGCCCCTCTCTGTCAGGTCTTTGAGCAGGTGGGGGTTG 899935 Query 37135 ACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCA 37194 || | |||||| || || || | || | | || || || ||||| || || | || Sbjct 899936 ACGATCTGAAACTCCCCCGAGAGCACCCGGCGGGTGTAGATGTTGCTTGTGTAGGCCTCG 899995 Query 37195 ATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGA 37254 |||||||| || || | | || || | || || || || |||||||| | | || Sbjct 899996 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATTGGGGACAGCAGC 900055 Query 37255 AGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAA 37314 ||||| || |||| |||||| | || ||| || || ||||| ||||| | Sbjct 900056 AGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGG 900115 Query 37315 TCTGTTGGGTTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCG 37374 || ||||| |||| |||||| || || || ||||| || |||||| | || || | Sbjct 900116 TCCGTTGGCGTCTTCTCCCACATGTCGTACTGGAGAATGCCCTTACTCACCGGCGAGCCT 900175 Query 37375 TTATATGTCTCATAAGGTCCGTAAATTTTAG-CTAGTTCGCAACTAGATTCTAGTGCGGC 37433 | || ||||| || ||| | | | | | || ||||| || | ||| | ||||| Sbjct 900176 TCGTACGTCTCGTA-GGTGCCAAGCTCGGCGGCCAGCTCGCAGCTCGCTTCCAAAGCGGC 900234 Query 37434 ATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGC 37493 |||||| || || || || || || || || | | || || || ||| || || | Sbjct 900235 ATAATACATAGTCTCAAAGATCTGGATGTTGAGCAGTTGAGCCTCGGGGCTTTCAAAGGG 900294 Query 37494 ATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATG 37553 ||| | || | || || |||||||||| ||||| || ||||| ||||| || || || Sbjct 900295 ATAACGCATAAGGATGAAGGCATCAGCCAATCCCTGGACCCCGATTCCTATCGGCCTGTG 900354 Query 37554 TTTCTTATTAGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATT 37613 | | || || || | |||| ||| || || || ||||| || || | || || Sbjct 900355 GCGCATGTTCGACCTCCTGGCTTCTTCCACCGGGTAGTAGTTGATGTCGATAACCTTGTT 900414 Query 37614 TAGATTTTTAACTAGTATTTTCGTAATTATTCTCAACTTGTCGAA--CATAAATACG-TT 37670 | || | || | || ||| || | | ||| || | || ||||| | || | Sbjct 900415 CAAGTTCCTGACAATTACTTTGGTCACGGATGCCAATTTTTTAAAGTCATAAGTCCGCTC 900474 Query 37671 ATTATTAACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTC 37730 | | || | | | | | | ||| | ||||| || || || || || || | Sbjct 900475 AGGGGTGACGTACATGTTGAGAGCGACAGAGGCCAGATTGCAAACCGCCACCTCGTCCTT 900534 Query 37731 GTTACTAAATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCT 37790 | || | | | | || || || ||||| || || | | || || |||| ||| Sbjct 900535 GCTAGTGTACTCGACGATTTCCGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGATTCTG 900594 Query 37791 TTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTAT 37850 || ||| || | || || | |||||| || | || |||||||| || |||| | Sbjct 900595 CTGGTTGCTCTTCCTGTTGCAGGCATCTTTGTAGACCATGTACGGCGTCCCGGTTTCTGT 900654 Query 37851 TTGAGCCTCGATAATAGATTTCCATAAACTTCT-TGCTTTAACGA-TCGCTTTAAttttt 37908 || | |||||| || | | |||| | || || || || || | ||| || | | Sbjct 900655 CTGCGACTCGATGATTGCATACCAT-AGCTGCTGAGCCTTCACCACACGC-TTCACCCTC 900712 Query 37909 ttCTTTGTTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATACATCGCAT--A 37966 || | || ||| | || | || | ||| || | |||||| || | ||| | Sbjct 900713 CCCTCCTTCTCATATCTGGTGTAGAGTTCTTCAAACTCCTCCCCCCA-GCA-CTCATCCA 900770 Query 37967 ATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCA 38026 || || || ||| |||||||| || ||||| ||||| | || || || || | || Sbjct 900771 GCCCGGGGCAGTCGGCCGGACACATCAGGGACCAGTCTTCGTTGTTCTCCACCCGCTTCA 900830 Query 38027 TAAATAAATCAGGTACCCATAATGCAGTA-AATAAATCTTTGGTTCTATATTCTTCGTTC 38085 | || | ||||| | ||| | || ||| || | || ||| || | || || || Sbjct 900831 TGAAGAGGTCAGGGATCCACAGGGC-GTAGAACAGGTCCCTGGCTCGCTGCTCCTCCTTT 900889 Query 38086 CCTACATTCTTTCTTAAGCT-TAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATA 38144 || ||| ||||| |||| || || || || | ||| |||||| || || | || Sbjct 900890 CCCGTGTTC-TTCTTCAGCTCCAGGAAGTCAAACACATCGAAGTGCCAGGGCTCCAGGTA 900948 Query 38145 AATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATT 38204 || | | || || |||||||| | || ||||||| || ||| | ||||||| || Sbjct 900949 CATGGCGAAGGCGCCGGGTCTTTTGTTGCCCCCCTGATCAACATAACGCGCTGTGTTGTT 901008 Query 38205 ATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGT 38264 || | || ||||| || || | || || || ||| || | |||| || || | Sbjct 901009 GTAAACCCTCAACATTGGGACGAGCCCGTTGGAACAGCCATTGGTGCCGGCGATGTAGCT 901068 Query 38265 ACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAA 38324 ||| | | || || || | | || || || || || || ||| || || | Sbjct 901069 CCCCGTGGATCTAATGCAGCTGACTGCCACGCCAATCCCTCCAGCTGATTTGGAGATGAG 901128 Query 38325 AGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTAT 38384 ||||| || || | ||| || | || || || || ||||||||||| || | || | Sbjct 901129 GGCGCAATGCTTCAGCGTGTCGTAGATCCCCTCGATGCTGTCATCCTTCATGGCGAGCAG 901188 Query 38385 AAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATG 38444 || || || |||| || ||| ||||| || || || | || || || || || Sbjct 901189 GAAGCAGCTGGACAGCTGCGGCCTGTTGGTTCCAGCATTGAAGAGGGTCGGGGAGGCGTG 901248 Query 38445 TATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCC 38504 ||||||| || || |||| || || || || || || | || ||||| || Sbjct 901249 GGTGAACCACTTCTCTGACAGCAGGTTGTAGGTCTCGATGACTGCTTCGATATCCGTCCC 901308 Query 38505 GTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGG 38543 ||| || || | || |||||||| ||||| || || || Sbjct 901309 GTGGATTCCCACAGCCACCCTCATGAGCATGTGCTGCGG 901347 >seq2861 Length=8583 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 |||||||| || || || || || || || || | |||||||||| |||| || || Sbjct 6306 TCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCTTC 6247 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| || || || || || ||||| || ||||| || ||||||||||| ||||| || Sbjct 6246 AGCCAGAAGATGGCGGCGAACGAACCCGAGAAGAAGATCCCCTCCACAGCGGCAAAGGCC 6187 Query 11774 ACTACTCTTTCTCC 11787 || || | ||||| Sbjct 6186 ACCACGCGCTCTCC 6173 >seq230 Length=973959 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 |||||||| || || || || || || || || | |||||||||| |||| || || Sbjct 832640 TCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCTTC 832699 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| || || || || || ||||| || ||||| || ||||||||||| ||||| || Sbjct 832700 AGCCAGAAGATGGCGGCGAACGAACCCGAGAAGAAGATCCCCTCCACAGCGGCAAAGGCC 832759 Query 11774 ACTACTCTTTCTCC 11787 || || | ||||| Sbjct 832760 ACCACGCGCTCTCC 832773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468477941663440