Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haplochromis_20burtoni_20[refseq_20GCF_5F000239415.1_202011-12-22] 8,001 sequences; 831,411,547 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq113 414 1e-110 seq47 105 9e-18 >seq113 Length=1687717 Score = 414 bits (458), Expect = 1e-110 Identities = 1266/1947 (65%), Gaps = 29/1947 (1%) Strand=Plus/Plus Query 65118 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTA 65177 ||||| ||||| |||||||| | ||||| || | || | || || || || || Sbjct 899876 TTCTTCATCTCCTCATTCCACAGGCCCCTCTCTGTCAGGTCTTTGAGCAGGTGGGGGTTG 899935 Query 65178 ACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 65237 || | ||||| || || || | || | || ||||| || || || || || | || Sbjct 899936 ACGATCTGAAACTCCCCCGAGAGCACCCGGCGGGTGTAGATGTTGCTTGTGTAGGCCTCG 899995 Query 65238 ACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 65297 | ||||| || || |||| || || || || || || || ||||| || | || || Sbjct 899996 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATTGGGGACAGCAGC 900055 Query 65298 AAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGA 65357 | || || || | || | | | ||| || || || || | | ||| | ||| || Sbjct 900056 AGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGG 900115 Query 65358 TCCGACGGTACAACNNNNNNNNNNNNNNNT--TGTAGAATACCGTTACTGGCGTACGATC 65415 |||| || | | | || ||||| || ||||| | ||| | Sbjct 900116 TCCGTTGG--CGTCTTCTCCCACATGTCGTACTGGAGAATGCCCTTACTCACCGGCGAGC 900173 Query 65416 CTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCAC 65475 || | || || ||||| | || || | || || || || ||||| || || || Sbjct 900174 CTTCGTACGTCTCGTAGGTGCCAAGCTCGGCGGCCAGCTCGCAGCTCGCTTCCAAAGCGG 900233 Query 65476 CGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATG 65535 | ||||| || || || ||||||| | || || ||| || || |||| ||||| | Sbjct 900234 CATAATACATAGTCTCAAAGATCTGGATGTTGAGCAGTTGAGCCTCGGGGCTTTCAAAGG 900293 Query 65536 GATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTAT 65595 ||||| | || || || || || || ||||| || || || || || || || || | Sbjct 900294 GATAACGCATAAGGATGAAGGCATCAGCCAATCCCTGGACCCCGATTCCTATCGGCCTGT 900353 Query 65596 GTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 65655 | | | | || || | |||||| | || || || || || || |||| || | Sbjct 900354 GGCGCATGTTCGACCTCCTGGCTTCTTCCACCGGGTAGTAGTTGATGTCGATAACCTTGT 900413 Query 65656 TGAGATTTCTGACAATTACTTTGACCAC--ATCCTTCAGTTTGAGAAAATCAAAT---CG 65710 | | || ||||||||||||||| ||| || | || ||| ||| ||| | || Sbjct 900414 TCAAGTTCCTGACAATTACTTTGGTCACGGATGC--CAATTTTTTAAAGTCATAAGTCCG 900471 Query 65711 CTCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATT 65770 |||| | || ||||||| | || ||||| |||||||| ||||| || ||||| | Sbjct 900472 CTCAGGGGTGACGTACATGTTGAGAGCGACAGAGGCCAGATTGCAAACCGCCACCTCGTC 900531 Query 65771 AGCATCCGCATATTGTATT-----ATCTCAGTGCAAAGATTACTACACTTGATGGTTCCT 65825 | | | || |||| | || || ||||| || || || ||||||||||| || Sbjct 900532 --CTTGC---TAGTGTACTCGACGATTTCCGTGCAGAGGTTGCTGCACTTGATGGTGCCC 900586 Query 65826 AAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCA 65885 | ||| || || || ||||| |||| || ||||| || || | ||| | || || || Sbjct 900587 AGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCATCTTTGTAGACCATGTACGGCGTCCCG 900646 Query 65886 GTTTCAATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGATTT 65944 ||||| |||| || || || || || | ||| | | || ||||||| | | | || Sbjct 900647 GTTTCTGTCTGCGACTCGATGATTGCATACCATAGCTGCT-GAGCCTTCACCACACGCTT 900705 Query 65945 GTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATT 66004 ||| || | || ||| || || | | ||| ||||| || ||||| | Sbjct 900706 CACCCTCCCCTCCTTCTCATATCTGGTGTAGAGTTCTTCAAACTCCTCCCCCCAGCACTC 900765 Query 66005 GTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCG 66064 |||| || || || || |||||||||||| ||||| ||| ||| | || ||| || Sbjct 900766 ATCCAGCCCGGGGCAGTCGGCCGGACACATCAGGGACCAGTCTTCGTTGTTCTCCACCCG 900825 Query 66065 TTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTC 66124 ||||| ||||| ||||| ||||| || || || | || |||| || || ||||| Sbjct 900826 CTTCATGAAGAGGTCAGGGATCCACAGGGCGTAGAACAGGTCCCTGGCTCGCTGCTCCTC 900885 Query 66125 GTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAA 66184 ||||| || ||||| || || || ||||| | | | ||| | ||||| || |||| Sbjct 900886 CTTTCCCGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACATCGAAGTGCCAGGGCTCCAG 900945 Query 66185 GTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTT 66244 ||| ||||| | | || || | |||||| || |||||||| | || | || ||||| Sbjct 900946 GTACATGGCGAAGGCGCCGGGTCTTTTGTTGCCCCCCTGATCAACATAACGCGCTGTGTT 901005 Query 66245 ATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATA 66304 || ||||| ||||||||||| | | || ||||| |||||||| |||| ||| || Sbjct 901006 GTTGTAAACCCTCAACATTGGGACGAGCCCGTTGGAACAGCCATTGGTGCCGGCGATGTA 901065 Query 66305 GCTTCCACTTGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGAT 66364 ||| || | | | ||| || | || | || || || || || ||| ||||| Sbjct 901066 GCTCCCCGTGGATCTAATGCAGCTGACTGCCACGCCAATCCCTCCAGCTGATTTGGAGAT 901125 Query 66365 TAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAG 66424 | ||||| | || | ||| || ||||| ||||| || || |||||| ||||| || Sbjct 901126 GAGGGCGCAATGCTTCAGCGTGTCGTAGATCCCCTCGATGCTGTCATCCTTCATGGCGAG 901185 Query 66425 TAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGC 66484 || || ||||| |||| || | | | ||||| ||||| || | ||| || || || Sbjct 901186 CAGGAAGCAGCTGGACAGCTGCGGCCTGTTGGTTCCAGCATTGAAGAGGGTCGGGGAGGC 901245 Query 66485 GTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCA 66544 ||| || ||||| || || || || || ||||| ||||| || ||| || |||||| Sbjct 901246 GTGGGTGAACCACTTCTCTGACAGCAGGTTGTAGGTCTCGATGACTGCTTCGATATCCGT 901305 Query 66545 TTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTT 66604 || ||||| || || || | ||| | ||||||||| || | ||| | | ||| Sbjct 901306 CCCGTGGATTCCCACAGCCACCCTCATGAGCATGTGCTGCGGACGCTCAGCTACTTTGCC 901365 Query 66605 GTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAA 66664 || || || | || |||||| |||| ||| || || ||||| ||||||| || || Sbjct 901366 ATTGATCTTTAGCAGGTAGGAGCGCTCCAGAGTCTTGAAGCCAAAGAAGTTGTAGGAGAA 901425 Query 66665 GTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCAT 66724 |||| || || || || ||||||| || || || | | ||| | || | Sbjct 901426 ATCTCTGTCATAGATTATGGCCGAGTTAAGGCGGTCTTTGTTTGCAAGAACAATGTCGAG 901485 Query 66725 GGTAATACTTGAAATAATCGGAGAATGTTTCCCATTTTTA--GGATTGACATAGTTGAAT 66782 || | ||||| || |||| | || | | || | || |||| |||||| | Sbjct 901486 TGTGTCTTTCGAAATCAT-GGAGGA-GTGGCGTTTGTTCAGGGGGTTGATGTAGTTGTAC 901543 Query 66783 AAATCCTCCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCT 66842 | |||||||| || || || || | || || || |||||||| | || || ||||| Sbjct 901544 AGGTCCTCCATGACGTCGCTGAACACCTTCTTCGTCTCTTTGTGCAAGTTAGAGACGGCG 901603 Query 66843 ATTCTAGCGGCTATAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCG 66902 || | || || | ||||| || || || | | || || |||||| || || || Sbjct 901604 ATGCGTGCTGCGAGGATGGCGTAGTCGGGGTACTTGGTTGTGAGAGTGGCAGCGATCTCC 901663 Query 66903 GCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTC 66962 || ||||| ||||| | || || || || || || | || | || ||||| |||||| Sbjct 901664 GCCGCCAGCGTGTCGAGCTCCACAGTGGTGACGCCGCTGTACAAACCCTGGATGACCTTC 901723 Query 66963 ATAGCTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCT-AAT 67021 || | || | || || | | || |||| | || || || || |||| || Sbjct 901724 ATCGTGATCTGGGCTGGGTCCACAAACTCCATGTTGAGTCCGTAGCA-AAGCTTCTGGAT 901782 Query 67022 ACGAGATGTGATTTTATCAAACATGAC 67048 |||||||||||||| || |||||||| Sbjct 901783 GCGAGATGTGATTTTGTCGAACATGAC 901809 >seq47 Length=2629205 Score = 105 bits (116), Expect = 9e-18 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 65790 ATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 65849 ||||| ||||| ||||| || | |||||||| || | ||||| |||||||||||| || Sbjct 775300 ATCTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGGTTTTGCTGATTACTCTTTCTG 775359 Query 65850 TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATC 65909 || || |||||||| |||| ||| |||| ||||||||||| |||| || || || || Sbjct 775360 TTGCAGGCATCCTTGTAAACCATGTATGGTGTACCAGTTTCTGTCTGCGACTCAATGATG 775419 Query 65910 GCTTTCCA 65917 || | ||| Sbjct 775420 GCGTACCA 775427 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 66456 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 66515 || || || || || | |||||||||||||| || ||||| || || || || | ||| Sbjct 776430 GTGCCAGCGTTGAACAGTGTAGGAGAAGCGTGAGTGAACCACTTCTCTGACAGCAAGTTG 776489 Query 66516 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 66575 || |||||||| |||| || || || | || |||||| || |||| || | ||||| | Sbjct 776490 TAGGTCTCAATGGCTGCATCAATGTCACCTTTATGAATCCCGACTGACACTCTCATTAGC 776549 Query 66576 ATGTGCTGAGGTC 66588 |||||||| |||| Sbjct 776550 ATGTGCTGGGGTC 776562 Score = 84.2 bits (92), Expect = 3e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| |||| ||| || || |||||||| | || ||||| || || | || || | | Sbjct 779213 CACTGAATACTTTCTTGGTCTCTTTGTGCAAGTTAGATACAGCGATGCGTGCAGCCAGGA 779272 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 ||||| || || |||| || || |||||| || | || |||||||||||||| | Sbjct 779273 CTGCATAGTCTGGGTGTTTGGTTGTGAGAGTGGCAGCAGTCTCTGCTGCCAGAGTGTCGA 779332 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 || || || || |||||| | || | || ||||| |||||||| Sbjct 779333 GCTCCACTGTGGTGACTCCACTGTACAAACCCTGGATCACCTTCAT 779378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658106974492840