Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haplochromis_20burtoni_20[refseq_20GCF_5F000239415.1_202011-12-22] 8,001 sequences; 831,411,547 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq384 150 1e-31 >seq384 Length=581854 Score = 150 bits (166), Expect = 1e-31 Identities = 213/294 (72%), Gaps = 8/294 (3%) Strand=Plus/Plus Query 91815 CCTGCAAAGAGGACTACAACATCATCATGGACACTGTCAGACAA-CTGGAACAAAGTGGC 91873 ||||||| ||||||| || ||||||| ||||| | | ||| || || | | ||| Sbjct 346953 CCTGCAAGGAGGACTGCAGAATCATCACAGACACAG-CGTCCAAGCTCGAGCGCTGCGGC 347011 Query 91874 TTCTACTGGGGTCCTTTGGGGGTCGAGGAGGCACATCGTATGCTGCGCAACTCGGCACTG 91933 |||||||||||||| |||| || ||||| || || || ||||| || || | | ||| Sbjct 347012 TTCTACTGGGGTCCCCTGGGAGTGGAGGACGCTCACCGCATGCTTCGGGACGCCCCGCTG 347071 Query 91934 GGCAGCTTTCTCATTCGGGATAGCAGGCAAAAGGACGTCTTGTTCACGCTGTCGTATCAC 91993 |||||||| ||||| || |||||| | || || |||||||| ||||||||||| || ||| Sbjct 347072 GGCAGCTTCCTCATCCGTGATAGCCGTCAGAAAGACGTCTTCTTCACGCTGTCCTACCAC 347131 Query 91994 TCTGTGACCGGACCCGTCAGTGTGAGGATTGAATACAAGGACAAGCAATTTTCCTTGGCT 92053 | ||| ||||| ||||| ||| | || || |||||| | || | || || | || Sbjct 347132 GCCAAGACGGGACCGGTCAGCGTGCGCATCGACTACAAGCGCCAGAAGTTCTCACTAGC- 347190 Query 92054 GGGAGCAAACAGAGGT-TTTC--ATCGGTCCTTCTCCTGTTGGACCATTACATC 92104 | |||| | | ||| |||| | | || || ||| ||||| ||||||||| Sbjct 347191 --GGGCAACCTGCGGTCTTTCCAAACACTCTTTGCCCTCTTGGAGCATTACATC 347242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356198862882403