Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haplochromis_20burtoni_20[refseq_20GCF_5F000239415.1_202011-12-22] 8,001 sequences; 831,411,547 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq113 412 5e-110 seq47 93.3 6e-14 seq2861 86.0 8e-12 seq230 86.0 8e-12 >seq113 Length=1687717 Score = 412 bits (456), Expect = 5e-110 Identities = 1070/1615 (66%), Gaps = 21/1615 (1%) Strand=Plus/Plus Query 71408 CGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTAT 71467 |||| || || || ||||| || || || ||||||| || || || || |||| | | Sbjct 900204 CGGCCAGCTCGCAGCTCGCTTCCAAAGCGGCATAATACATAGTCTCAAAGATCTGGATGT 900263 Query 71468 TGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTA 71527 |||| ||| || || ||||| ||||| |||||| | || || || || || || | Sbjct 900264 TGAGCAGTTGAGCCTCGGGGCTTTCAAAGGGATAACGCATAAGGATGAAGGCATCAGCCA 900323 Query 71528 ATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAA 71587 |||| || || || || || || || ||||| | | | || || | |||||| | Sbjct 900324 ATCCCTGGACCCCGATTCCTATCGGCCTGTGGCGCATGTTCGACCTCCTGGCTTCTTCCA 900383 Query 71588 TAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCAC-- 71645 || || || || || || |||| || || | || ||||| ||||||||| ||| Sbjct 900384 CCGGGTAGTAGTTGATGTCGATAACCTTGTTCAAGTTCCTGACAATTACTTTGGTCACGG 900443 Query 71646 ATCCTTTAGTTTGAGAAAATCAAATCTCCCATCTA---TTACAAACACGTTCAAGGCAAC 71702 || | | ||| ||| ||| | ||| || | || ||| ||| | || || Sbjct 900444 ATGCC--AATTTTTTAAAGTCATAAGTCCGCTCAGGGGTGACGTACATGTTGAGAGCGAC 900501 Query 71703 AGATGCCAGATTACAAACGGCTACCTCAT--TAGCATCGGCATATTGTATAATTTCAGTG 71760 ||| |||||||| ||||| || ||||| | | || | || | | ||||| ||| Sbjct 900502 AGAGGCCAGATTGCAAACCGCCACCTCGTCCTTGCTAGTG--TACTCGACGATTTCCGTG 900559 Query 71761 CAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCA 71820 || || || || ||||||||||| || | ||| || || || ||||| |||| || ||| Sbjct 900560 CAGAGGTTGCTGCACTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCA 900619 Query 71821 TCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAG 71880 || || || | || |||| || || ||||| |||| || || || || || | ||| Sbjct 900620 TCTTTGTAGACCATGTACGGCGTCCCGGTTTCTGTCTGCGACTCGATGATTGCATACCAT 900679 Query 71881 A-CGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAA 71939 | | || ||||||| | | | ||| ||| || | || ||| || || | Sbjct 900680 AGCTGCT-GAGCCTTCACCACACGCTTCACCCTCCCCTCCTTCTCATATCTGGTGTAGAG 900738 Query 71940 TCGTTCGAACTCGTCTCCCCAAGCATTG-TCTAATCCAGGACATTCATTCGGACACATCA 71998 | ||| ||||| || ||||| ||| | || | || || || || ||||||||||| Sbjct 900739 TTCTTCAAACTCCTCCCCCCA-GCACTCATCCAGCCCGGGGCAGTCGGCCGGACACATCA 900797 Query 71999 ATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTA 72058 ||||| ||| | | | | || || ||||| ||||| ||||| ||||| || || Sbjct 900798 GGGACCAGTCTTCGTTGTTCTCCACCCGCTTCATGAAGAGGTCAGGGATCCACAGGGCGT 900857 Query 72059 TAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACG 72118 || || || |||| || |||||||| ||||| || ||||| || || || ||||| Sbjct 900858 AGAACAGGTCCCTGGCTCGCTGCTCCTCCTTTCCCGTGTTCTTCTTCAGCTCCAGGAAGT 900917 Query 72119 CCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTC 72178 | | | ||| | ||||| || |||| ||| ||||| | | || || | |||||| | Sbjct 900918 CAAACACATCGAAGTGCCAGGGCTCCAGGTACATGGCGAAGGCGCCGGGTCTTTTGTTGC 900977 Query 72179 CTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCAT 72238 | |||||||| | || | || ||||| || ||||| ||||||||||| | | || | Sbjct 900978 CCCCCTGATCAACATAACGCGCTGTGTTGTTGTAAACCCTCAACATTGGGACGAGCCCGT 901037 Query 72239 TGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATA 72298 |||| |||||||| |||| ||| ||||| || ||| | ||| ||| | || | Sbjct 901038 TGGAACAGCCATTGGTGCCGGCGATGTAGCTCCCCGTGGATCTAATGCAGCTGACTGCCA 901097 Query 72299 GACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGC 72358 || || || || || ||| ||||| | ||||| | || | ||| || ||||| | Sbjct 901098 CGCCAATCCCTCCAGCTGATTTGGAGATGAGGGCGCAATGCTTCAGCGTGTCGTAGATCC 901157 Query 72359 CCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAG 72418 |||| || || |||||| ||||| || || || ||||| |||| || | | | | Sbjct 901158 CCTCGATGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCTGTTGG 901217 Query 72419 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGT 72478 |||| ||||| || | ||| || || ||||| || ||||| || || ||||| || |||| Sbjct 901218 TTCCAGCATTGAAGAGGGTCGGGGAGGCGTGGGTGAACCACTTCTCTGACAGCAGGTTGT 901277 Query 72479 ACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACA 72538 | ||||| || ||| ||| |||||| || ||||| || || || | ||| | || Sbjct 901278 AGGTCTCGATGACTGCTTCGATATCCGTCCCGTGGATTCCCACAGCCACCCTCATGAGCA 901337 Query 72539 TATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAG 72598 | ||||| || | ||| | | ||| ||| || || | || |||||| |||| || Sbjct 901338 TGTGCTGCGGACGCTCAGCTACTTTGCCATTGATCTTTAGCAGGTAGGAGCGCTCCAGAG 901397 Query 72599 TTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTT 72658 | || || ||||| ||||||| || || |||| || || || || |||| || || Sbjct 901398 TCTTGAAGCCAAAGAAGTTGTAGGAGAAATCTCTGTCATAGATTATGGCCGAGTTAAGGC 901457 Query 72659 TATCCTTATATTTGTTAACTATATCCATGGTGATACTTGAAATAATCGGAGAATGTTTCC 72718 || || | | ||| || || | ||| | ||||| || |||| | || | Sbjct 901458 GGTCTTTGTTTGCAAGAACAATGTCGAGTGTGTCTTTCGAAATCAT-GGAGGA-GTGGCG 901515 Query 72719 CATTTTTA--GGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttt 72776 | || | || || | |||||| | | |||||||| || || || || | || || Sbjct 901516 TTTGTTCAGGGGGTTGATGTAGTTGTACAGGTCCTCCATGACGTCGCTGAACACCTTCTT 901575 Query 72777 tGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTGGATG 72836 || || ||||| | || || ||||| || | || || || ||||| || || || | Sbjct 901576 CGTCTCTTTGTGCAAGTTAGAGACGGCGATGCGTGCTGCGAGGATGGCGTAGTCGGGGTA 901635 Query 72837 TTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGTTGTTAC 72896 | || || |||||| || || || || ||||| ||||| | || || || || || Sbjct 901636 CTTGGTTGTGAGAGTGGCAGCGATCTCCGCCGCCAGCGTGTCGAGCTCCACAGTGGTGAC 901695 Query 72897 TCCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGATCAGT 72956 || | || | || ||||| |||||||| | || | || || | | || | Sbjct 901696 GCCGCTGTACAAACCCTGGATGACCTTCATCGTGATCTGGGCTGGGTCCACAAACTCCAT 901755 Query 72957 GTTTAAGCCATAACATAATTTTCT-AATACGAGACGTGATTTTATCAAACATAAC 73010 ||| | || || || || |||| || ||||| |||||||| || ||||| || Sbjct 901756 GTTGAGTCCGTAGCA-AAGCTTCTGGATGCGAGATGTGATTTTGTCGAACATGAC 901809 >seq47 Length=2629205 Score = 93.3 bits (102), Expect = 6e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820 |||| |||| ||| || || || ||||| | || ||||| || || | || || || | Sbjct 779213 CACTGAATACTTTCTTGGTCTCTTTGTGCAAGTTAGATACAGCGATGCGTGCAGCCAGGA 779272 Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880 ||||| ||||| |||| || || |||||| || | ||||||||||||||||| | Sbjct 779273 CTGCATAGTCTGGGTGTTTGGTTGTGAGAGTGGCAGCAGTCTCTGCTGCCAGAGTGTCGA 779332 Query 72881 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 72926 || || || || |||||| | || | || ||||| |||||||| Sbjct 779333 GCTCCACTGTGGTGACTCCACTGTACAAACCCTGGATCACCTTCAT 779378 Score = 91.5 bits (100), Expect = 2e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 71752 ATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 71811 || || ||||| ||||| || | |||||||| || | ||||| |||||||||||| || Sbjct 775300 ATCTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGGTTTTGCTGATTACTCTTTCTG 775359 Query 71812 TTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATC 71871 || || |||||||| |||| || | || ||||||||||| |||| || || || || Sbjct 775360 TTGCAGGCATCCTTGTAAACCATGTATGGTGTACCAGTTTCTGTCTGCGACTCAATGATG 775419 Query 71872 GCTTTCCA 71879 || | ||| Sbjct 775420 GCGTACCA 775427 >seq2861 Length=8583 Score = 86.0 bits (94), Expect = 8e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 42335 TATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAAT 42394 || || ||||||| || || ||||| ||||| || ||||| || ||||| ||||| || Sbjct 5875 TACGTGTCGATCAGCAGGCTGTACATCTCTGAGTGGATGTTCTCCATGGCGATCTGGAAA 5816 Query 42395 CCGTAGAAACATCTGGCCTCGGTAACCTGTACTTC 42429 ||||||||||| | |||||| || ||||| ||||| Sbjct 5815 CCGTAGAAACACCGGGCCTCCGTTACCTGCACTTC 5781 >seq230 Length=973959 Score = 86.0 bits (94), Expect = 8e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 42335 TATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAAT 42394 || || ||||||| || || ||||| ||||| || ||||| || ||||| ||||| || Sbjct 833071 TACGTGTCGATCAGCAGGCTGTACATCTCTGAGTGGATGTTCTCCATGGCGATCTGGAAA 833130 Query 42395 CCGTAGAAACATCTGGCCTCGGTAACCTGTACTTC 42429 ||||||||||| | |||||| || ||||| ||||| Sbjct 833131 CCGTAGAAACACCGGGCCTCCGTTACCTGCACTTC 833165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671072077690760