Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haplochromis_20burtoni_20[refseq_20GCF_5F000239415.1_202011-12-22] 8,001 sequences; 831,411,547 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq2861 104 5e-17 seq230 104 5e-17 seq19 86.0 1e-11 >seq2861 Length=8583 Score = 104 bits (114), Expect = 5e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 || || ||||||||||| || || || ||||| ||||| || || ||||| ||||| ||| Sbjct 6185 GTGGCCTTTGCCGCTGTGGAGGGGATCTTCTTCTCGGGTTCGTTCGCCGCCATCTTCTGG 6244 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 ||||||| |||||||| ||||| || | || ||||| ||||| | || ||||| ||| Sbjct 6245 CTGAAGAAGAGAGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTCATCAGCAGAGAC 6304 Query 269258 GA 269259 || Sbjct 6305 GA 6306 >seq230 Length=973959 Score = 104 bits (114), Expect = 5e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 || || ||||||||||| || || || ||||| ||||| || || ||||| ||||| ||| Sbjct 832761 GTGGCCTTTGCCGCTGTGGAGGGGATCTTCTTCTCGGGTTCGTTCGCCGCCATCTTCTGG 832702 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 ||||||| |||||||| ||||| || | || ||||| ||||| | || ||||| ||| Sbjct 832701 CTGAAGAAGAGAGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTCATCAGCAGAGAC 832642 Query 269258 GA 269259 || Sbjct 832641 GA 832640 >seq19 Length=3626725 Score = 86.0 bits (94), Expect = 1e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 || |||||||| ||||| ||||| || ||||| || || || ||||| ||||||| ||| Sbjct 2022283 GTGGCTTTTGCAGCTGTGGAAGGCATCTTCTTCTCTGGTTCATTTGCTGCTATCTACTGG 2022342 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 ||||||| || || | ||||| || | | | ||| ||||| | || ||||||||| Sbjct 2022343 CTGAAGAAGAGGGGGTTAATGCCTGGCCTTAGCTACTCCAACGAGCTCATTAGCAGGGAC 2022402 Query 269258 GA 269259 || Sbjct 2022403 GA 2022404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151280366911708