Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haplochromis_20burtoni_20[refseq_20GCF_5F000239415.1_202011-12-22] 8,001 sequences; 831,411,547 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq50 127 1e-24 >seq50 Length=2598561 Score = 127 bits (140), Expect = 1e-24 Identities = 134/175 (77%), Gaps = 1/175 (1%) Strand=Plus/Minus Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTC 25832 |||||| ||||||||||| || || | |||||||||||| || ||||| ||||||||||| Sbjct 117420 CATGTCTGTGTACTCTGCACCAAAGTGCCTCCACTGGAAACCATACACAGGTCCTAGGTC 117361 Query 25833 TCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTC 25892 || ||||| |||| || || || |||| |||||| | || || ||||| || Sbjct 117360 ACCCTCTTCTCTGTCAGTGAACCCAAGGTTGTCCAGAAAGTCCCGAGACCCGTTGGCATC 117301 Query 25893 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGA-CCCTCTGAC 25946 |||||| || || || || || || ||||| ||||| ||||| || |||| |||| Sbjct 117300 CCAGATTTTCACTCCTTTTTCTGACAGCTCCTTGGAATTTGTTGATCCCTGTGAC 117246 Score = 104 bits (114), Expect = 2e-17 Identities = 121/162 (75%), Gaps = 1/162 (1%) Strand=Plus/Minus Query 25491 AGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGT 25550 || || |||| || || |||||||| || || || | |||||||||||||| || || Sbjct 118233 AGTCCTGTAATGTGTGCAATCATGTAGGTAAGAAGTGAATAGCTGGCGATGTTGAAAGGC 118174 Query 25551 ACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCT 25610 ||||| || ||||| || | || | |||||| ||||||||||| ||||| |||||| Sbjct 118173 ACCCCTAATCCCATATCAGCT-GAGCGCTGGTACAGCTGACACGACAGCTCGCCGTCGCA 118115 Query 25611 CACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTAT 25652 |||||| ||||| || | | || ||| || || || || || Sbjct 118114 CACGTAGAACTGGCAGAGTGCGTGGCAGGGGGGCAGCGCCAT 118073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340104432438573