Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haplochromis_20burtoni_20[refseq_20GCF_5F000239415.1_202011-12-22] 8,001 sequences; 831,411,547 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq249 147 3e-30 seq100 118 2e-21 seq18 109 8e-19 >seq249 Length=906947 Score = 147 bits (162), Expect = 3e-30 Identities = 132/166 (80%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 9605 TTGTTTCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTG 9664 |||| | ||||| | |||||| || | |||||| || ||| ||||||| ||| | || Sbjct 207620 TTGTCTTACCGATTAGGATGAGCCGTGCGGTCTGGAAGAGTCTTTCGTCATCCCAGTATG 207561 Query 9665 GATGTTCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGT 9724 | || | |||||| ||||||||||| | ||||||||| | ||||||||| || |||| Sbjct 207560 GGTGGACCTCTTTCAGCACATCGCACACACGGTTGTGTTCGCGGAGCCAGATGGTGGCGT 207501 Query 9725 ACATCATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGC 9770 ||||||| |||||||| ||||||||||| ||||| || |||||||| Sbjct 207500 ACATCATCAGACCAGGGACCAGGCCAAATGCCTCGTGGCCGACAGC 207455 Score = 141 bits (156), Expect = 1e-28 Identities = 158/211 (75%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 8765 CCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCATGAGGCCT 8824 || |||||||||||||| |||||||| |||||||||||||| || |||| ||||| Sbjct 209281 CCTCCGAAGGTGCTGGGCTTCCAGTACTCCGGGGAGCAGATGGGATTTCCCATTAGGCCC 209222 Query 8825 TTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGG 8884 |||||||| || |||||||||| ||| | || | || || |||||| |||| | | | Sbjct 209221 TTGAGGGAGAAAGGAGCCCCCATCTCCACCATTGTTTCCCCAAAGATGCCGTTATGTCTG 209162 Query 8885 GGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTAAAGGGCC 8944 ||||| ||||||| | || | ||| | ||||||||| |||| || ||||| || || Sbjct 209161 GGCTTCTCCACCAGCAGGCCCGGGTAGAGCTCCACAGCATCGACGTGCCCGTACAGCTCC 209102 Query 8945 CTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 || | ||||| ||||| || || |||| Sbjct 209101 TCCAGCACCGCAGCCATTTCTTTCTCCCCTG 209071 >seq100 Length=1875368 Score = 118 bits (130), Expect = 2e-21 Identities = 175/248 (71%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 8693 GGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATCCCA 8752 ||||||| |||| |||| ||| || || | | ||| || |||||||||| | Sbjct 94877 GGACACCATTTGCTGTTGAGACACACCAGTTTTTTCAGAGTGGCCATCTTGACGATATTA 94818 Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812 || || ||||| || ||||||||||| |||||||| | || |||||||| ||| Sbjct 94817 AAGCCGGTTTCTCCTCCAAAGGTGCTGGGCTTCCAGTATTCAGGCGAGCAGATTGGGTTT 94758 Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872 | | |||||||| || ||||| ||||| |||| ||| | |||||||| || || ||| Sbjct 94757 CCAAGCAGGCCTTTCAGTGAAAAGGGAGCACCCATCTCCACCATGCTCTCTCCAAAAATG 94698 Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932 || || |||||| || || | || | || | ||| ||||||| || || ||||| Sbjct 94697 GCTTTAGGACGGATTTTCTCTAGCATTATGCCTGGGTAAAACTCCAGGGCGTCTATGTCA 94638 Query 8933 CCGTAAAG 8940 || || || Sbjct 94637 CCATAGAG 94630 Score = 109 bits (120), Expect = 8e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || || ||||||||||||| | ||||| || || || || ||| ||| |||||| Sbjct 90152 TCACCAATAATGATGAGTCTGGCTGTCTGGAAAAGCTGCTCATCATCCCAGGTGGGATGT 90093 Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729 ||| || || | || || |||||||| ||||||| ||||| || || || ||||| Sbjct 90092 TCTGCCTTTAGGATGTCACAGACTCTGTTATGTTCCCGCAGCCATATGGTGGCATACATG 90033 Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGC 9789 | ||||| |||| | |||||| |||| ||||||| ||||||||| | | | | || Sbjct 90032 GTTAGACCCGGCAGGATGCCAAATACCTCCTGACCGATGGCCAGACGCTTTTCTGCTGGG 89973 Query 9790 ACTTCGGGAGGATAGATCATGTGCACCTGGACATC 9824 | | |||||| | ||||||||| |||| || Sbjct 89972 ATGTTTTCAGGATACACCATGTGCACTGGGACCTC 89938 >seq18 Length=3650284 Score = 109 bits (120), Expect = 8e-19 Identities = 138/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 8751 CAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGT 8810 |||| ||||| | ||| || ||||||||||| |||||||| |||| ||||| || || Sbjct 2577347 CAAAGCCCACCTTTCCTCCAAAGGTGCTGGGCTTCCAGTATTCCGGAGAGCATATAGGGT 2577406 Query 8811 TCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGA 8870 | ||| ||||||||| ||||| || || || |||| ||| | ||||| || || || | Sbjct 2577407 TTCCCAGGAGGCCTTTAAGGGAGAAGGGGGCACCCATCTCCACCATGCTTTCTCCAAATA 2577466 Query 8871 TGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGT 8930 |||| | || | || |||| ||| || |||| ||| || |||| || || |||| Sbjct 2577467 TGGCCCCCGCTCGTGTTTTCTCCAACAACAAGCCGGGGTAAAATTCCAGTGCGTCAATGT 2577526 Query 8931 CTCCGTAAAG 8940 | |||| || Sbjct 2577527 CATCGTAGAG 2577536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708453938663440