Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haplochromis_20burtoni_20[refseq_20GCF_5F000239415.1_202011-12-22] 8,001 sequences; 831,411,547 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq572 196 8e-46 seq40 178 2e-40 seq1035 163 4e-36 seq218 159 5e-35 seq4634 118 2e-22 >seq572 Length=343505 Score = 196 bits (216), Expect = 8e-46 Identities = 204/268 (76%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| || | | |||||| |||||||||||||| ||||||||||| ||||| Sbjct 259882 CGCTAAGCGTCACCGGAAAGTTCTTCGTGATAACATCCAAGGTATCACCAAGCCCGCTAT 259941 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| ||||| ||||| |||||| |||| || | |||| || |||| Sbjct 259942 CCGCCGTCTGGCTCGCCGTGGCGGAGTGAAGCGTATCTCCGGCCTAATCTACGAGGAGAC 260001 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| | ||| | |||||| ||| ||| |||| ||| ||| | ||| || || Sbjct 260002 CCGTGGTGTGCTCAAGGTTTTCCTCGAGAACGTGATCCGTGACGCTGTTACCTACACTGA 260061 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | |||||||| ||| ||||||| | || || || |||| | || || Sbjct 260062 GCACGCGAAGAGGAAGACTGTGACCGCCATGGACGTGGTGTACGCTCTGAAGAGGCAGGG 260121 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | |||||||| ||| ||||| Sbjct 260122 TCGCACTCTGTATGGTTTCGGAGGTTAA 260149 >seq40 Length=2877665 Score = 178 bits (196), Expect = 2e-40 Identities = 202/271 (75%), Gaps = 0/271 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | || || ||||||||||| || |||||||| || || || Sbjct 2102636 CGCCAAGCGTCACCGTAAGGTGCTCCGCGATAACATCCAGGGTATCACCAAACCCGCGAT 2102577 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||||||||||||||| ||||| |||||| |||| || ||| |||| || |||| Sbjct 2102576 CCGTCGTCTGGCTCGTCGTGGCGGAGTGAAGCGTATCTCCGGTTTGATCTACGAGGAGAC 2102517 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| | || | ||| ||| |||| ||||||| | ||| || || Sbjct 2102516 CCGCGGAGTGCTGAAGGTGTTTTTGGAGAACGTCATCCGTGATGCTGTTACCTACACGGA 2102457 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||||| | |||||||| ||| |||||||| | || ||||| |||| | || || Sbjct 2102456 GCACGCTAAGAGGAAGACTGTGACCGCCATGGATGTGGTGTATGCTCTGAAGAGGCAGGG 2102397 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 ||| | | || || ||||| ||||| || Sbjct 2102396 CCGCACTCTGTACGGCTTTGGCGGTTAAACT 2102366 >seq1035 Length=99009 Score = 163 bits (180), Expect = 4e-36 Identities = 182/243 (75%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | ||| || ||||||||||| || ||| |||| || ||||| Sbjct 519 CGCCAAGCGTCACCGTAAAGTTCTCCGTGATAACATCCAGGGCATCGCCAAACCCGCTAT 578 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||||||||| ||||| ||||| |||||| | || || || |||| || |||| Sbjct 579 CCGTCGTCTGGCTCGCCGTGGCGGAGTGAAGCGTATTTCCGGTCTGATCTACGAGGAGAC 638 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| | ||||| ||| ||| |||| |||||| || || || || Sbjct 639 CCGCGGTGTGCTCAAGGTGTTCCTGGAGAACGTCATCCGTGATGCCGTCACGTACACTGA 698 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | |||||||| ||| |||||||| | || || || |||| | || || Sbjct 699 GCACGCCAAGAGGAAGACTGTGACCGCCATGGATGTGGTGTACGCTCTGAAGAGGCAGGG 758 Query 16672 CCG 16674 ||| Sbjct 759 CCG 761 >seq218 Length=1022023 Score = 159 bits (176), Expect = 5e-35 Identities = 196/268 (73%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||| || || || | | ||| || |||||||||||||| || || ||||| ||||| Sbjct 381359 CGCTAAACGGCACCGTAAAGTTCTCCGTGATAACATCCAAGGCATTACTAAGCCTGCTAT 381418 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || || ||||| ||||| ||||| || |||||| |||| || || | || || |||| Sbjct 381419 TCGCCGCCTGGCCCGTCGCGGTGGTGTGAAGCGTATCTCCGGCCTGATTTACGAGGAGAC 381478 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| | ||||| ||| ||| |||| ||||| || ||| || || Sbjct 381479 CCGCGGTGTACTTAAGGTGTTCCTGGAGAACGTGATCCGCGATGCAGTCACCTACACTGA 381538 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | |||||||| ||| | |||||| | || ||||| | ||| | || || Sbjct 381539 GCACGCCAAGAGAAAGACTGTGACCGCAATGGATGTGGTGTATGCTCTTAAAAGGCAGGG 381598 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||||| | || ||||| ||| ||||| Sbjct 381599 CCGTACTCTATACGGTTTCGGAGGTTAA 381626 >seq4634 Length=3709 Score = 118 bits (130), Expect = 2e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||||||||||||||| ||||| |||||| |||| || || |||| || |||| | Sbjct 3709 CGCCGTCTGGCTCGTCGTGGCGGAGTGAAGCGTATCTCGGGTCTGATCTACGAGGAGACT 3650 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| ||||| | ||||| ||| ||| |||| ||| || || || |||||| Sbjct 3649 CGCGGTGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGTGACGCCGTCACTTACACCGAG 3590 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | ||||| || ||| ||||||| | || || || |||| | || ||| Sbjct 3589 CACGCCAAGAGGAAGACCGTGACCGCCATGGACGTGGTGTACGCTCTGAAGAGACAGGGC 3530 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 || | | || || || || ||||| || Sbjct 3529 CGCACTCTGTACGGCTTCGGCGGTTAAACT 3500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79067884629693