Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haplochromis_20burtoni_20[refseq_20GCF_5F000239415.1_202011-12-22] 8,001 sequences; 831,411,547 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq113 181 3e-40 seq47 87.8 5e-12 seq50 84.2 6e-11 >seq113 Length=1687717 Score = 181 bits (200), Expect = 3e-40 Identities = 555/844 (66%), Gaps = 22/844 (3%) Strand=Plus/Minus Query 363430 ATCAATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATC 363489 |||||||| | | | ||| || |||||||| ||| | ||| | || ||| | || ||| Sbjct 901371 ATCAATGGCAAAGTAGCTGAGCGTCCGCAGCACATGCTCATGAGGGTGGCTGTGGGAATC 901312 Query 363490 CATTGCCCGGATGTTGATGCCGCGATTGAAACATATAAGCTTCTA--AGTGCTCGTGTAT 363547 || | ||||| | || || | || || || || || || || || | ||| | Sbjct 901311 CACGGGACGGATATCGAAGCAGTCATCGAGACCTACAACCTGCTGTCAGAGAA-GTGG-T 901254 Query 363548 TCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTT 363607 |||| |||||| | || || | | |||||||||||| | || ||| |||| | Sbjct 901253 TCACCCACGCCTCCCCGACCCTCTTCAATGCTGGAACCAACAGGCCGCAGCTGTCCAGCT 901194 Query 363608 GCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATT 363667 |||| || || |||||||| || ||||||||| |||| ||||| || ||| ||| Sbjct 901193 GCTTCCTGCTCGCCATGAAGGATGACAGCATCGAGGGGATCTACGACACGCTGAAGCATT 901134 Query 363668 GTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCG-TGCA 363726 | || || || ||||| || || || ||||| || | || | || | | || Sbjct 901133 GCGCCCTCATCTCCAAATCAGCTGGAGGGATTGGCGTGGCAGTCAGCTGCATTAGATCCA 901074 Query 363727 CAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGT 363786 | | || ||||| |||||| || | || || ||||| || || ||| | | Sbjct 901073 CGGGG-AGCTACATCGCCGGCACCAATGGCTGTTCCAACGGGCTCGTCCCAATGTTGAGG 901015 Query 363787 GTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGG--AGGAAAGCGCAAAGGGGCGT 363844 || | |||| || ||| | || || || ||||| || | |||| | || || | Sbjct 901014 GTTTACAACAACACAGCGCGTTATGTTGATCAGGGGGGCAACAAAAGACCC--GGCGCCT 900957 Query 363845 TTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAA 363904 | || ||||| || ||||| || |||| | ||||| || || ||||| ||| | Sbjct 900956 TCGCCATGTACCTGGAGCCCTGGCACTTCGATGTGTTTGACTTCCTGGAGCTGAAGAAGA 900897 Query 363905 ACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACC 363964 |||||||||| ||||| ||| || | || |||||||| || || ||| | |||||| Sbjct 900896 ACACGGGAAAGGAGGAGCAGCGAGCCAGGGACCTGTTCTACGCCCTGTGGATCCCTGACC 900837 Query 363965 ATTTTATGAAGCGCGTGGAG-GCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGT 364023 || |||||||| |||||| || ||| | ||||| || | || || ||| || Sbjct 900836 TCTTCATGAAGCGGGTGGAGAACAACGAAG-ACTGGTCCCTGATGTGTCCGGCCGACTGC 900778 Query 364024 CCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTG--CTCTATACGAAAAGTATGAAT 364081 || || || || ||||| || || | || | ||||| || | | ||||| Sbjct 900777 CCCGGGCTGGATGAGTGCTGGGGGGAGGAGTTTGAAGAACTCTACACCAGA--TATGAGA 900720 Query 364082 CGGAGGGAAAGG---CTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGG 364138 |||||| | || ||| | | || ||| ||||||||| ||| ||||| | Sbjct 900719 AGGAGGGGAGGGTGAAGCGTGTG---GTGAAGGCTCAGCAGCTATGGTATGCAATCATCG 900663 Query 364139 ATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGT 364198 | ||||||| || || || || || || ||| | ||||||||| | |||||| | ||| Sbjct 900662 AGTCGCAGACAGAAACCGGGACGCCGTACATGGTCTACAAAGATGCCTGCAACAGGAAGA 900603 Query 364199 CCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAAT 364258 |||||||||| | || || || || || |||||||| || || || || | || | Sbjct 900602 GCAACCAGCAGAATCTGGGCACCATCAAGTGCAGCAACCTCTGCACGGAAATCGTCGAGT 900543 Query 364259 ACAC 364262 |||| Sbjct 900542 ACAC 900539 Score = 91.5 bits (100), Expect = 4e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 364969 CCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATT 365028 ||||| |||||||||| | ||||||||||||||||| || ||| | |||| | | Sbjct 899053 CCAGATGATCTGAAGCAGCTCTACAAAACCGTATGGGAGATCTCCCAGAAAACTGTAGTC 898994 Query 365029 GATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATG 365088 | ||||| ||||| || || || | ||| ||||||||||| | ||| | ||| Sbjct 898993 AAGATGGCCGCCGACCGTGGGGCCTACATCGACCAGAGCCAGTCCCTGAACATCCACATA 898934 Query 365089 ACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAA 365138 | |||| | || || |||||| || |||||| |||||||| ||||| Sbjct 898933 GCAGAGCCGAACTACGGCAAGCTGACCAGCATGCACTTCTACGGCTGGAA 898884 >seq47 Length=2629205 Score = 87.8 bits (96), Expect = 5e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 363838 GGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTC 363897 |||||||| |||||||| |||||||| ||| | ||| | ||||||||| | ||| | Sbjct 775908 GGGGCGTTCGCTATGTACCTCGAGCCGTGGCATTCTGATGTGTTTGAGTTTTTGGAGTTG 775849 Query 363898 CGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTT 363957 ||| |||||||| ||||| || | | || || || ||||| | || | ||| | Sbjct 775848 AAGAAGAACACGGGTAAAGAAGAGCAGAGGGCGCGGGACCTGTTTTTCGCCTTGTGGATC 775789 Query 363958 TCTGACCATTTTATGAAGCGCGTGGA 363983 | |||| |||||||||||| ||||| Sbjct 775788 CCAGACCTTTTTATGAAGCGAGTGGA 775763 >seq50 Length=2598561 Score = 84.2 bits (92), Expect = 6e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 111390 ACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAATTTGGGATGGAAATGGATCACGT 111449 |||||| | || || || ||| |||| || ||||| ||||||| || || || || Sbjct 117259 ACAAATTCCAAGGAGCTGTCAGAAAAAGGAGTGAAAATCTGGGATGCCAACGGGTCTCGG 117318 Query 111450 GACTTTCTAGATTCAGTTGGTCTTGTCGACAACGAAGAAGGTGATCTCGGACCAGTTTAC 111509 |||||||| || |||| | |||| ||||| ||||| || ||||| || || Sbjct 117319 GACTTTCTGGACAACCTTGGGTTCACTGACAGAGAAGAGGGTGACCTAGGACCTGTGTAT 117378 Query 111510 GGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAACCATGCA 111553 || || || ||| | |||||||||||||| |||| | |||||| Sbjct 117379 GGTTTCCAGTGGAGGCACTTTGGTGCAGAGTACACAGACATGCA 117422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303219989556782