Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haplochromis_20burtoni_20[refseq_20GCF_5F000239415.1_202011-12-22] 8,001 sequences; 831,411,547 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq113 201 1e-46 seq47 118 1e-21 >seq113 Length=1687717 Score = 201 bits (222), Expect = 1e-46 Identities = 961/1508 (64%), Gaps = 42/1508 (3%) Strand=Plus/Plus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 ||||||| ||||||||| || | | ||| || || || | ||| ||| ||| Sbjct 899933 TTGACGATCTGAAACTCCCCCGAGAGCACCCGGCGGGTGTAGATGTTGCTTGTGTAGGCC 899992 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 || | |||||||| ||||||||||| || ||||| | || |||||||| | || | Sbjct 899993 TCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATTGGGGACAGC 900052 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237 | | || | || ||| || || ||| | ||||| ||| ||| ||||| Sbjct 900053 AGCAGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCAC 900112 Query 145238 AGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGCTG 145297 || || ||| || ||||||||||||||||| | |||||||| || | || | Sbjct 900113 AGGTCCGTTGGCGTCTTCTCCCACATGTCGTACTGGAGAATGCCCTTACTCACCGGCGAG 900172 Query 145298 CCTTGAAAGGAACTGTAACTGCCCCAAGTTTTG--GCGAGCTCGCAACTCGCCTCCAGAG 145355 |||| | | ||| |||| ||| | | || |||||||| ||||| |||| || Sbjct 900173 CCTTCGTACGTCTCGTAGGTGCC--AAGCTCGGCGGCCAGCTCGCAGCTCGCTTCCAAAG 900230 Query 145356 CGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTCGT 145415 || | |||| || ||||| || || |||||||||| || || ||| || Sbjct 900231 CGGCATAATACATAGTCTCAAAGATCTGGATGTTGAGCAGTTGAGCCTCGGGGCTTTCAA 900290 Query 145416 ACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGGCC 145475 | || |||| || | || ||||| || | ||||| | || | || || |||| Sbjct 900291 AGGGATAACGCATAAGGATGAAGGCATCAGCCAATCCCTGGACCCCGATTCCTATCGGCC 900350 Query 145476 GATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATATCGATTACGGTCGATAATTT 145535 || |||||| | |||| || || | || || || |||||||| | Sbjct 900351 TGTGGCGCATGTTCGACCTCCTGGCTTCTTCCACCGGGTAGTAGTTGATGTCGATAACCT 900410 Query 145536 TATTCAAGTTTCGCACTACTACCTTTGTAATG--TGCCGCAACTTTTCAAAGTCAAACCG 145593 | |||||||| | || | ||| || || | | |||| || |||| ||||||| | Sbjct 900411 TGTTCAAGTTCCTGACAATTACTTTGGTCACGGATGCC--AATTTTTTAAAGTCATA--- 900465 Query 145594 AGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTGCCGT 145653 || | ||| | || | | |||| |||| || |||| ||| ||||| ||| Sbjct 900466 AGTCCGCTCAGGGGTGACGTACATGTTGAGAGCGACAGAGGCCAGATTGCAAACCGCCA- 900524 Query 145654 CTCCTCGGCGTCGCT---GTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGT 145710 ||||| | | ||| ||| | ||||| || | ||| | ||||| || |||||||| Sbjct 900525 --CCTCGTCCTTGCTAGTGTACTCGACGATTTCCGTGCAGAGGTTGCTGCACTTGATGGT 900582 Query 145711 TCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCC 145770 |||||||| ||||| || || ||||||||||| || || ||||||| ||||||||| Sbjct 900583 GCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCATCTTTGTAGACCATGTACGGCGT 900642 Query 145771 GCCAGTCTCCACCTGCGTCTCCACGAT--AAAACGGTGCAAGTCCTGCGCACGCACCTGC 145828 || || || ||||| ||| | ||| | || | | | ||| || |||| Sbjct 900643 CCCGGTTTCTGTCTGCGACTCGATGATTGCATACCAT--AGCTGCTGAGCCTTCACCACA 900700 Query 145829 TGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAACCGTAG 145888 ||| | ||||| | || ||| | ||||||| || |||||| | || || Sbjct 900701 CGCTTCACCCTCCCCTCCTTCTCATATCTGGTGTAGAGTTCTTCAAACTCCTCCCCCCAG 900760 Query 145889 CAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGGCGTTG 145948 || || ||| ||||| || | | ||||||||||| ||||| | ||||| | Sbjct 900761 CACTCATCCAGCCCGGGGCAGTCGGCCGGACACATCAGGGACCAGTCTTCGTTGTTCTCC 900820 Query 145949 ACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGC--GCGCTTTGC 146006 || |||| ||| || | || || | |||||| ||||| | || ||| | || | ||| Sbjct 900821 ACCCGCTTCATGAAGAGGTCAGGGATCCACAGGGCGTAGAACAGGTCCCTGGCTCGCTGC 900880 Query 146007 AATCCTCAGCACCCATGTTTCGCTTCAAATTAAGCACACTATAGATGTCCGCGTGCCACG 146066 ||||| ||| |||| ||||| | || | | | | || |||||| | Sbjct 900881 --TCCTCCTTTCCCGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACATCGAAGTGCCAGG 900938 Query 146067 GTTCAATATAGACGGCGAGGGCTCC---TTTTCGTTTGCCACCCTGGTCCACGTGACGTA 146123 | || | || | ||||| ||| || | || ||||| ||||| || || | ||| Sbjct 900939 GCTCCAGGTACATGGCGAAGGCGCCGGGTCTTTTGTTGCCCCCCTGATCAACATAACGCG 900998 Query 146124 CCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTTCGTAGAGT 146183 | ||||||| | || | || ||| || ||| ||| ||| ||| || || | Sbjct 900999 CTGTGTTGTTGTAAACCCTCAACATTGGGACGAGCCCGTTGGAACAGCCATTGGTGCCGG 901058 Query 146184 TTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACCGCCGCCGTACT 146243 || | | || ||| | | ||| || |||||| | || || | | | Sbjct 901059 CGATGTAGCTCCCCGTGGATCTAATGCAGCTGACTGCCACGCCAATCCCTCCAGCTGATT 901118 Query 146244 TGGATATAGCGGCGCAGTCGCCGAGCGTCTCGTAGATGCCGTCAATGCTATC--GCTTCG 146301 |||| || |||||| | ||||| |||||||| || || ||||| || |||| Sbjct 901119 TGGAGATGAGGGCGCAATGCTTCAGCGTGTCGTAGATCCCCTCGATGCTGTCATCCTTC- 901177 Query 146302 AATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCCCCGCCGAGAACAACGT 146361 ||| ||||||| ||||| | ||| ||||| | | || || || ||| | || Sbjct 901178 -ATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCTGTTGGTTCCAGCATTGAAGAGGGT 901236 Query 146362 CGGGCTCGCGTGCGT-AAACATTTTTCGGCTCATCATCCGATACGTTTCGATAGCGTCTT 146420 |||| ||||| || || || || || | || || || || ||||| | ||| Sbjct 901237 CGGGGAGGCGTGGGTGAACCACTTCTCTG-ACAGCAGGTTGTAGGTCTCGATGACTGCTT 901295 Query 146421 GAATGT-CGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGGGGCCGCTCC 146479 || | |||| || || || |||| ||| || | |||||||||||| || || ||||| Sbjct 901296 CGATATCCGTC-CCGTGGATTCCCACAGCCACCCTCATGAGCATGTGCTGCGGACGCTCA 901354 Query 146480 GCCACTT---GATTGTCAATCTTTAACAAATAGCCGTTCTCCAGGGTTTTGTATCCGAAA 146536 || |||| |||| ||||||| || ||| | |||||| || ||| | || || Sbjct 901355 GCTACTTTGCCATTG---ATCTTTAGCAGGTAGGAGCGCTCCAGAGTCTTGAAGCCAAAG 901411 Query 146537 AATTTGTA 146544 || ||||| Sbjct 901412 AAGTTGTA 901419 >seq47 Length=2629205 Score = 118 bits (130), Expect = 1e-21 Identities = 104/130 (80%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 145668 TGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGAT 145727 |||| | ||||||||| | ||||| |||||| |||||||||| ||||| |||||||||| Sbjct 775289 TGTACTCTACGATCTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGGTTTTGCTGAT 775348 Query 145728 TACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCG 145787 |||| || |||||||| || |||||||| | |||||| ||| ||||| || ||||| Sbjct 775349 TACTCTTTCTGTTGCAGGCATCCTTGTAAACCATGTATGGTGTACCAGTTTCTGTCTGCG 775408 Query 145788 TCTCCACGAT 145797 ||| | ||| Sbjct 775409 ACTCAATGAT 775418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471965592819840