Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haplochromis_20burtoni_20[refseq_20GCF_5F000239415.1_202011-12-22] 8,001 sequences; 831,411,547 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq405 122 6e-23 seq663 87.8 1e-12 seq13 87.8 1e-12 >seq405 Length=546046 Score = 122 bits (134), Expect = 6e-23 Identities = 130/172 (76%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 6319 ACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACG 6378 ||||||| || | ||| || || ||||| ||||||||||| ||||||||| |||||||| Sbjct 104031 ACCCGACCAAGTTTTTTGGTTGTGAACTCGGCGCTCAGACCCAGTTTGATACCAAAAACG 104090 Query 6379 AGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCT 6438 | || | |||||| |||||||| || | | |||| |||||||| | ||||| || | Sbjct 104091 ATCGTTACATCGTCAACGGATCCCACGAGGCGAACAAGTTGCAGGACATGCTTGATGGGT 104150 Query 6439 TTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCT 6490 | || | || |||||||||||| || || || ||||| || || || || Sbjct 104151 TCATCAGAAAATTTGTGCTGTGTGCCGAGTGTGACAACCCTGAAACTGATCT 104202 >seq663 Length=264360 Score = 87.8 bits (96), Expect = 1e-12 Identities = 65/74 (88%), Gaps = 4/74 (5%) Strand=Plus/Plus Query 19948 TCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCG-- 20005 ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 40666 TCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTCGTCTATCGGTCTCGTG 40725 Query 20006 -CGGTA-ATATTTA 20017 ||||| |||| || Sbjct 40726 CCGGTATATATATA 40739 >seq13 Length=4128974 Score = 87.8 bits (96), Expect = 1e-12 Identities = 75/93 (81%), Gaps = 5/93 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||| | ||| || || ||||| || |||||| | Sbjct 3378918 AAGCCCGTTCCCTTGGCTGTGGTTTCTCAAGACAGCAGCTAGGGACAGTGGAAATCTCAT 3378977 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 | |||| ||||||| |||||||| | |||||| Sbjct 3378978 TCATCCATTCATGCATGTCACTAAGTTGATGAC 3379010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334914538565831