Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haplochromis_20burtoni_20[refseq_20GCF_5F000239415.1_202011-12-22] 8,001 sequences; 831,411,547 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq113 417 1e-111 seq47 105 8e-18 >seq113 Length=1687717 Score = 417 bits (462), Expect = 1e-111 Identities = 1267/1947 (65%), Gaps = 29/1947 (1%) Strand=Plus/Plus Query 62129 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTA 62188 ||||| ||||| |||||||| | ||||| || | || | || || || || || Sbjct 899876 TTCTTCATCTCCTCATTCCACAGGCCCCTCTCTGTCAGGTCTTTGAGCAGGTGGGGGTTG 899935 Query 62189 ACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 62248 || | ||||| || || || | || | || ||||| || || || || || | || Sbjct 899936 ACGATCTGAAACTCCCCCGAGAGCACCCGGCGGGTGTAGATGTTGCTTGTGTAGGCCTCG 899995 Query 62249 ACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 62308 | ||||| || || |||| || || || || || || || ||||| || | || || Sbjct 899996 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATTGGGGACAGCAGC 900055 Query 62309 AAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGA 62368 | || || || | || | | | ||| || || || || | | ||| | ||| || Sbjct 900056 AGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGG 900115 Query 62369 TCCGACGGTACAACNNNNNNNNNNNNNNNT--TGTAGAATACCGTTACTGGCGTACGATC 62426 |||| || | | | || ||||| || ||||| | ||| | Sbjct 900116 TCCGTTGG--CGTCTTCTCCCACATGTCGTACTGGAGAATGCCCTTACTCACCGGCGAGC 900173 Query 62427 CTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCAC 62486 || | || || ||||| | || || | || || || || ||||| || || || Sbjct 900174 CTTCGTACGTCTCGTAGGTGCCAAGCTCGGCGGCCAGCTCGCAGCTCGCTTCCAAAGCGG 900233 Query 62487 CGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATG 62546 | ||||| || || || ||||||| | || || ||| || || |||| ||||| | Sbjct 900234 CATAATACATAGTCTCAAAGATCTGGATGTTGAGCAGTTGAGCCTCGGGGCTTTCAAAGG 900293 Query 62547 GATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTAT 62606 ||||| | || || || || || || ||||| || || || || || || || || | Sbjct 900294 GATAACGCATAAGGATGAAGGCATCAGCCAATCCCTGGACCCCGATTCCTATCGGCCTGT 900353 Query 62607 GTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 62666 | | | | || || | |||||| | || || || || || || |||| || | Sbjct 900354 GGCGCATGTTCGACCTCCTGGCTTCTTCCACCGGGTAGTAGTTGATGTCGATAACCTTGT 900413 Query 62667 TGAGATTTCTGACAATTACTTTGACCAC--ATCCTTCAGTTTGAGAAAATCAAAT---CG 62721 | | || ||||||||||||||| ||| || | || ||| ||| ||| | || Sbjct 900414 TCAAGTTCCTGACAATTACTTTGGTCACGGATGC--CAATTTTTTAAAGTCATAAGTCCG 900471 Query 62722 CCCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATT 62781 | || | || ||||||| | || ||||| |||||||| ||||| || ||||| | Sbjct 900472 CTCAGGGGTGACGTACATGTTGAGAGCGACAGAGGCCAGATTGCAAACCGCCACCTCGTC 900531 Query 62782 AGCATCCGCATATTGTATT-----ATCTCAGTGCAAAGATTACTACACTTGATGGTTCCT 62836 | | | || |||| | || || ||||| || || || ||||||||||| || Sbjct 900532 --CTTGC---TAGTGTACTCGACGATTTCCGTGCAGAGGTTGCTGCACTTGATGGTGCCC 900586 Query 62837 AAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCA 62896 | ||| || || || ||||| |||| || ||||| || || | ||| | || || || Sbjct 900587 AGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCATCTTTGTAGACCATGTACGGCGTCCCG 900646 Query 62897 GTTTCAATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGATTT 62955 ||||| |||| || || || || || | ||| | | || ||||||| | | | || Sbjct 900647 GTTTCTGTCTGCGACTCGATGATTGCATACCATAGCTGCT-GAGCCTTCACCACACGCTT 900705 Query 62956 GTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATT 63015 ||| || | || ||| || || | | ||| ||||| || ||||| | Sbjct 900706 CACCCTCCCCTCCTTCTCATATCTGGTGTAGAGTTCTTCAAACTCCTCCCCCCAGCACTC 900765 Query 63016 GTCCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCG 63075 ||||| || || || || |||||||||||| ||||| ||| ||| | || ||| || Sbjct 900766 ATCCAGCCCGGGGCAGTCGGCCGGACACATCAGGGACCAGTCTTCGTTGTTCTCCACCCG 900825 Query 63076 TTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTC 63135 ||||| ||||| ||||| ||||| || || || || || |||| || || ||||| Sbjct 900826 CTTCATGAAGAGGTCAGGGATCCACAGGGCGTAGAACAGGTCCCTGGCTCGCTGCTCCTC 900885 Query 63136 GTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAA 63195 ||||| || ||||| || || || ||||| | | | ||| | ||||| || |||| Sbjct 900886 CTTTCCCGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACATCGAAGTGCCAGGGCTCCAG 900945 Query 63196 GTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTT 63255 ||| ||||| | | || || | |||||| || |||||||| | || | || ||||| Sbjct 900946 GTACATGGCGAAGGCGCCGGGTCTTTTGTTGCCCCCCTGATCAACATAACGCGCTGTGTT 901005 Query 63256 ATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATA 63315 || ||||| ||||||||||| | | || ||||| |||||||| || | ||| || Sbjct 901006 GTTGTAAACCCTCAACATTGGGACGAGCCCGTTGGAACAGCCATTGGTGCCGGCGATGTA 901065 Query 63316 GCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGAT 63375 ||| || ||| | ||| || | || | || || || || || ||| ||||| Sbjct 901066 GCTCCCCGTGGATCTAATGCAGCTGACTGCCACGCCAATCCCTCCAGCTGATTTGGAGAT 901125 Query 63376 TAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAG 63435 | ||||| | || | ||| || ||||| ||||| || || |||||| ||||| || Sbjct 901126 GAGGGCGCAATGCTTCAGCGTGTCGTAGATCCCCTCGATGCTGTCATCCTTCATGGCGAG 901185 Query 63436 TAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGC 63495 || || ||||| |||| || | | | ||||| ||||| || | ||| || || || Sbjct 901186 CAGGAAGCAGCTGGACAGCTGCGGCCTGTTGGTTCCAGCATTGAAGAGGGTCGGGGAGGC 901245 Query 63496 GTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCA 63555 ||| || ||||| || || || || || ||||| ||||| || ||| || |||||| Sbjct 901246 GTGGGTGAACCACTTCTCTGACAGCAGGTTGTAGGTCTCGATGACTGCTTCGATATCCGT 901305 Query 63556 TTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTT 63615 || ||||| || || || | ||| | ||||||||| || | ||| | | ||| Sbjct 901306 CCCGTGGATTCCCACAGCCACCCTCATGAGCATGTGCTGCGGACGCTCAGCTACTTTGCC 901365 Query 63616 GTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAA 63675 || || || | || |||||| |||| ||| || || ||||| ||||||| || || Sbjct 901366 ATTGATCTTTAGCAGGTAGGAGCGCTCCAGAGTCTTGAAGCCAAAGAAGTTGTAGGAGAA 901425 Query 63676 GTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCAT 63735 |||| || || || || ||||||| || || || | | ||| | || | Sbjct 901426 ATCTCTGTCATAGATTATGGCCGAGTTAAGGCGGTCTTTGTTTGCAAGAACAATGTCGAG 901485 Query 63736 GGTAATACTTGAAATAATAGGAAAATGTTTCCCATTTTTA--GGATTGACATAGTTGAAT 63793 || | ||||| || ||| | || | | || | || |||| |||||| | Sbjct 901486 TGTGTCTTTCGAAATCAT-GGAGGA-GTGGCGTTTGTTCAGGGGGTTGATGTAGTTGTAC 901543 Query 63794 AAATCCTCCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCT 63853 | |||||||| || || || || | || || || |||||||| | || || ||||| Sbjct 901544 AGGTCCTCCATGACGTCGCTGAACACCTTCTTCGTCTCTTTGTGCAAGTTAGAGACGGCG 901603 Query 63854 ATTCTAGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCG 63913 || | || || || ||||| || || || | | || || |||||| || || || Sbjct 901604 ATGCGTGCTGCGAGGATGGCGTAGTCGGGGTACTTGGTTGTGAGAGTGGCAGCGATCTCC 901663 Query 63914 GCTGCCAGAGTGTCCAATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTC 63973 || ||||| ||||| | || || || || || || | || | || ||||| |||||| Sbjct 901664 GCCGCCAGCGTGTCGAGCTCCACAGTGGTGACGCCGCTGTACAAACCCTGGATGACCTTC 901723 Query 63974 ATAGCTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCT-AAT 64032 || | || | || || | | || |||| | || || || || |||| || Sbjct 901724 ATCGTGATCTGGGCTGGGTCCACAAACTCCATGTTGAGTCCGTAGCA-AAGCTTCTGGAT 901782 Query 64033 ACGAGATGTGATTTTATCAAACATGAC 64059 |||||||||||||| || |||||||| Sbjct 901783 GCGAGATGTGATTTTGTCGAACATGAC 901809 >seq47 Length=2629205 Score = 105 bits (116), Expect = 8e-18 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 62801 ATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 62860 ||||| ||||| ||||| || | |||||||| || | ||||| |||||||||||| || Sbjct 775300 ATCTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGGTTTTGCTGATTACTCTTTCTG 775359 Query 62861 TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATC 62920 || || |||||||| |||| ||| |||| ||||||||||| |||| || || || || Sbjct 775360 TTGCAGGCATCCTTGTAAACCATGTATGGTGTACCAGTTTCTGTCTGCGACTCAATGATG 775419 Query 62921 GCTTTCCA 62928 || | ||| Sbjct 775420 GCGTACCA 775427 Score = 96.9 bits (106), Expect = 4e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 || || || || || | ||||||||||||||||| ||||| || || || || | ||| Sbjct 776430 GTGCCAGCGTTGAACAGTGTAGGAGAAGCGTGAGTGAACCACTTCTCTGACAGCAAGTTG 776489 Query 63527 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63586 || |||||||| |||| || || || | || |||||| || |||| || | ||||| | Sbjct 776490 TAGGTCTCAATGGCTGCATCAATGTCACCTTTATGAATCCCGACTGACACTCTCATTAGC 776549 Query 63587 ATGTGCTGAGGTC 63599 |||||||| |||| Sbjct 776550 ATGTGCTGGGGTC 776562 Score = 84.2 bits (92), Expect = 3e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869 |||| |||| ||| || || |||||||| | || ||||| || || | || || || | Sbjct 779213 CACTGAATACTTTCTTGGTCTCTTTGTGCAAGTTAGATACAGCGATGCGTGCAGCCAGGA 779272 Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929 ||||| || || |||| || || |||||| || | || |||||||||||||| | Sbjct 779273 CTGCATAGTCTGGGTGTTTGGTTGTGAGAGTGGCAGCAGTCTCTGCTGCCAGAGTGTCGA 779332 Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCAT 63975 || || || || || ||| | || | || ||||| |||||||| Sbjct 779333 GCTCCACTGTGGTGACTCCACTGTACAAACCCTGGATCACCTTCAT 779378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633568628879600