Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haplochromis_20burtoni_20[refseq_20GCF_5F000239415.1_202011-12-22] 8,001 sequences; 831,411,547 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq113 518 6e-142 seq2861 132 9e-26 seq230 132 9e-26 seq47 105 1e-17 seq19 93.3 8e-14 >seq113 Length=1687717 Score = 518 bits (574), Expect = 6e-142 Identities = 1085/1597 (68%), Gaps = 50/1597 (3%) Strand=Plus/Plus Query 244010 GAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTC- 244068 ||||| |||| |||| |||||| | ||| | || |||||||||||| | ||| Sbjct 899852 GAGCCATTGTTAGCGATCAGCTGGTTCTTCATCTCCTCATTCCACAGGCCC---CTCTCT 899908 Query 244069 --CAGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGC 244126 ||| | | || |||||| ||| || | ||||||||| ||||| ||||| ||||| Sbjct 899909 GTCAGGTCTTTGAGCAGGTGGGGGTTGACGATCTGAAACTCCCCCGAGAGCACCCGGCGG 899968 Query 244127 TGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTG 244186 ||||| |||||| || | ||||||| ||| |||||||||| ||||| || ||| Sbjct 899969 GTGTAGATGTTGCTTGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTG 900028 Query 244187 CTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGG 244246 || || ||||| || |||| |||||| |||||||||||||| || | ||| Sbjct 900029 GAGGCCGTGGGCATTGGGGACAGCAGCAGGCTGTTCCTCACGCCATGTTTGGCGATCTTC 900088 Query 244247 AGTCTGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATG 244306 | ||| ||||||||||||| | ||| | |||| | |||||||| Sbjct 900089 TCCTTCAGCAGCTTCCAGTCCCACAGGTCCGT-------TGGCGTCTTCT--CCCACATG 900139 Query 244307 TCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCG 244366 || |||| || | ||||| || || || ||| ||||| ||| ||||| || | Sbjct 900140 TCGTACTGGAGAATGCCCTTACTCACCGGCGAGCCTTCGTACGTCTCGTAGGTGCCAA-G 900198 Query 244367 CGCTG-GGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATC-- 244423 | | | |||||||| |||||| | || | ||||| || || || ||||| |||||| Sbjct 900199 CTCGGCGGCCAGCTCGCAGCTCGCTTCCAAAGCGGCATAATACATAGTCTCAAAGATCTG 900258 Query 244424 -ATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCC-CATCATCATGAAGA 244481 || ||| || | | |||| | || | || ||||| | ||| | |||||| Sbjct 900259 GATGTTGAGCAGTT---GAGCCTCGGGGCTT-TCAAAGGGATAACGCATAAGGATGAAGG 900314 Query 244482 CGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGG 244541 | || |||| |||||| || ||||| || || || ||||| ||| |||| || | | ||| Sbjct 900315 CATCAGCCAATCCCTGGACCCCGATTCCTATCGGCCTGTGGCGCATGTTCGACCTCCTGG 900374 Query 244542 CTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCA-TG 244600 |||| ||| ||||| ||||| |||||| |||||||| | ||| | | || | | Sbjct 900375 CTTCTTCCACCGGGTAGTAGTTGATGTCGATAACCTTGTTCAAGTTCCTGACAATTACTT 900434 Query 244601 CGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATC 244660 || | ||| |||| | |||||| || || | ||| | | || Sbjct 900435 TGGTC-ACGGATGCCAATTTTTTAAAGTCATAA--GTCCG----CTCAGGGGTG------ 900481 Query 244661 CTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTG 244720 || || |||||| ||||| |||||| ||||| || |||||||| ||| | | Sbjct 900482 ---ACGTACATGTTGAGAGCGACAGAGGCCAGATTGCAAACCGCCACCTCGTCCTTGCTA 900538 Query 244721 GTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGA 244780 ||||||| ||| || || ||||||||||| |||||||||||||||||||| | ||| || Sbjct 900539 GTGTACTCGACGATTTCCGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGATTCTGCTGG 900598 Query 244781 TTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGG 244840 ||| ||| ||||||||| || ||||||| |||| | ||| |||||| || ||| Sbjct 900599 TTGCTCTTCCTGTTGCAGGCATCTTTGTAGACCATGTACGGCGTCCCGGTTTCTGTCTGC 900658 Query 244841 GCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCT 244900 | ||| || | ||| || | | |||||| ||| | || | ||||| Sbjct 900659 GACTCGATGATTGCATACCATAGCTGCTGAGCCTTCACCACACGCTTCACCCTCCCCTCC 900718 Query 244901 GCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGG 244960 ||| || | |||||| || | || ||||| |||||| ||| || || |||||| Sbjct 900719 TTCTCATATCTGGTGTAGAGTTCTTCAAACTCCTCCCCCCAGCACTCATCCAGCCCGGGG 900778 Query 244961 CACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGG 245020 || ||||| ||||| || ||| || || || || |||| || |||||||||| Sbjct 900779 CAGTCGGCCGGACACATCAGGGACCAGTCTTCGTTGTTCTCCACCCGCTTCATGAAGAGG 900838 Query 245021 TCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTC 245080 || |||||||| ||||| | ||| |||||||||| | |||||| ||| || |||||| Sbjct 900839 TCAGGGATCCACAGGGCGTAGAACAGGTCCCTGGCTCGCTGCTCCTCCTTTCCCGTGTTC 900898 Query 245081 TTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGG 245140 ||| ||||||||| |||||||| || |||| |||||||||||||| ||| | |||| | Sbjct 900899 TTCTTCAGCTCCAGGAAGTCAAACACATCGAAGTGCCAGGGCTCCAGGTACATGGCGAAG 900958 Query 245141 GCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCGCGTTGAAGATGCGC 245200 |||||||| | |||||||| ||||| || || | | | |||| | | | | Sbjct 900959 GCGCCGGGTCTTTTGTTGCCCCCCTGATCAACATAACGCGCTGTGTTGTTGTAAACCCTC 901018 Query 245201 AGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCC 245260 | | || || | ||||| || ||| |||||||| ||||||| ||| || Sbjct 901019 AACATTGGGACGAGCCCGTTGGAACAGCCATTGGTGCCGGCGATGTAGCTCCCCGTGGAT 901078 Query 245261 CTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTC 245320 || | | ||||| | || ||| | || || || ||||||||||||||||| | Sbjct 901079 CTAATGCAGCTGACTGCCACGCCAATCCCTCCAGCTGATTTGGAGATGAGGGCGCAATGC 901138 Query 245321 TTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAG 245380 || | ||||| || ||||| |||||||| ||||||| |||||| |||||| | Sbjct 901139 TTCAGCGTGTCGTAGATCCCCTCGATGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTG 901198 Query 245381 GACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAG 245440 |||||||| ||| || | | | | ||||| || || ||| ||||||||| || | Sbjct 901199 GACAGCTGCGGCCTGTTGGTTCCAGCATTGAAGAGGGTCGGGGAGGCGTGGGTGAACCA- 901257 Query 245441 CGGCTC-GAGAGGAACCCGTACGTCTGGAGCAGAGCGTCGATGT-TGTCGCCGTGGATCT 245498 | ||| || || | ||| |||| || | || ||||| | ||| |||||||| Sbjct 901258 CTTCTCTGACAGCAGGTTGTAGGTCTCGATGACTGCTTCGATATCCGTC-CCGTGGATTC 901316 Query 245499 GCAGGGCGCACCTCATGAGGGTGTGCTGGGGCGTCTC-GAT-GGGTCCCTCGGGTCCCTT 245556 || || ||||||||| ||||||| || ||| | | | || | | ||| Sbjct 901317 CCACAGCCACCCTCATGAGCATGTGCTGCGGACGCTCAGCTACTTTGCCATTGAT--CTT 901374 Query 245557 GAGCATGTAGGAGCGCTCGAGCGTCTTGAACCCAAAG 245593 |||| |||||||||||| || |||||||| |||||| Sbjct 901375 TAGCAGGTAGGAGCGCTCCAGAGTCTTGAAGCCAAAG 901411 >seq2861 Length=8583 Score = 132 bits (146), Expect = 9e-26 Identities = 107/127 (84%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||| |||||| |||| || ||||| |||||||||||||| | |||||| ||||||||| Sbjct 6183 TGGTGGCCTTTGCCGCTGTGGAGGGGATCTTCTTCTCGGGTTCGTTCGCCGCCATCTTCT 6242 Query 42766 GGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 |||| ||| ||| ||| | ||||||||| || |||||||| ||||| ||||||||||| Sbjct 6243 GGCTGAAGAAGAGAGGCCT-GATGCCCGGCCTGACCTTCTCCAACGAGCTCATCAGCAGA 6301 Query 42825 GACGAGG 42831 ||||||| Sbjct 6302 GACGAGG 6308 Score = 86.0 bits (94), Expect = 1e-11 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 ||||| || ||||| |||||| |||| ||| | ||||||||||| ||||||||||||||| Sbjct 5997 CTGTTTAATGCCATCGAGACGCTGCCATGCGTGAAGAAGAAGGCTGACTGGGCGCTCAAC 6056 Query 42669 TGGATCG 42675 ||||||| Sbjct 6057 TGGATCG 6063 Score = 84.2 bits (92), Expect = 4e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 ||| || ||||| |||||||||||||| ||||||| ||||||||||| || |||||||| Sbjct 7128 CCCTTTTGACTTCATGGAGAACATCTCCCTGGAGGGAAAGACCAACTTCTTTGAGAAGCG 7187 Query 43130 CGTCGCCGACTACCAG 43145 || | ||| |||||| Sbjct 7188 GGTGGGCGAGTACCAG 7203 >seq230 Length=973959 Score = 132 bits (146), Expect = 9e-26 Identities = 107/127 (84%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||| |||||| |||| || ||||| |||||||||||||| | |||||| ||||||||| Sbjct 832763 TGGTGGCCTTTGCCGCTGTGGAGGGGATCTTCTTCTCGGGTTCGTTCGCCGCCATCTTCT 832704 Query 42766 GGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 |||| ||| ||| ||| | ||||||||| || |||||||| ||||| ||||||||||| Sbjct 832703 GGCTGAAGAAGAGAGGCCT-GATGCCCGGCCTGACCTTCTCCAACGAGCTCATCAGCAGA 832645 Query 42825 GACGAGG 42831 ||||||| Sbjct 832644 GACGAGG 832638 Score = 86.0 bits (94), Expect = 1e-11 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 ||||| || ||||| |||||| |||| ||| | ||||||||||| ||||||||||||||| Sbjct 832949 CTGTTTAATGCCATCGAGACGCTGCCGTGCGTGAAGAAGAAGGCTGACTGGGCGCTCAAC 832890 Query 42669 TGGATCG 42675 ||||||| Sbjct 832889 TGGATCG 832883 Score = 84.2 bits (92), Expect = 4e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 ||| || ||||| |||||||||||||| ||||||| ||||||||||| || |||||||| Sbjct 823191 CCCTTTTGACTTCATGGAGAACATCTCCCTGGAGGGAAAGACCAACTTCTTTGAGAAGCG 823250 Query 43130 CGTCGCCGACTACCAG 43145 || | ||| |||||| Sbjct 823251 GGTGGGCGAGTACCAG 823266 >seq47 Length=2629205 Score = 105 bits (116), Expect = 1e-17 Identities = 112/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 244096 CACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGAT 244155 ||||||||||||||| || ||||| | ||| ||||| ||||||| || | |||||| Sbjct 774316 CACCTGAAACTCTCCTGAAAGCACCCTGCGGGTGTAGATGTTGCTGGTGTATGCCTCGAT 774375 Query 244156 GCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAG 244215 | ||| | |||||||| ||||| || ||| || || ||||| || |||| ||||| Sbjct 774376 GGACTCATTATTGCCCAGGATCTGGGCAGTGGATGCTGTGGGCATTGGGGACAAAAGCAG 774435 Query 244216 ACTGTTCCTCACGCCGTGCCTCTGGATG 244243 || |||||||| || ||||| ||||| Sbjct 774436 GCTATTCCTCACACCATGCCTGAGGATG 774463 >seq19 Length=3626725 Score = 93.3 bits (102), Expect = 8e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||| || | || || ||| | || || || |||||||||||||| || | || || Sbjct 2022271 GGGGAGCGGATTGTGGCTTTTGCAGCTGTGGAAGGCATCTTCTTCTCTGGTTCATTTGCT 2022330 Query 42756 TCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTC 42815 | |||| |||||| ||| ||| || || ||||| || || | || ||| ||||| ||| Sbjct 2022331 GCTATCTACTGGCTGAAGAAGAGGGGGTTAATGCCTGGCCTTAGCTACTCCAACGAGCTC 2022390 Query 42816 ATCAGCAGGGACGAGG 42831 || ||||||||||||| Sbjct 2022391 ATTAGCAGGGACGAGG 2022406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944244754275760