Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haplochromis_20burtoni_20[refseq_20GCF_5F000239415.1_202011-12-22] 8,001 sequences; 831,411,547 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq113 167 2e-36 >seq113 Length=1687717 Score = 167 bits (184), Expect = 2e-36 Identities = 592/922 (64%), Gaps = 10/922 (1%) Strand=Plus/Minus Query 93718 TACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGG 93777 ||| | | ||||| |||||| ||||||||| || ||||| || ||||| |||||| Sbjct 901419 TACAACTTCTTTGGCTTCAAGACTCTGGAGCGCTCCTACCTGCTAAAGATCAATGGCAAA 901360 Query 93778 GTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGAC 93837 || | ||||| ||||| || |||| ||| | || || | || || ||||| || Sbjct 901359 GTAGCTGAGCGTCCGCAGCACATGCTCATGAGGGTGGCTGTGGGAATCCACGGGACGGAT 901300 Query 93838 ATGCCGAAT--GTTTTGCGGGCTTTCAGAGACATGCGG---GACAAGAGGTATACCATGG 93892 || |||| || | | | | || || ||| | || ||| ||| ||| | Sbjct 901299 AT--CGAAGCAGTCATCGAGACCTACA---ACCTGCTGTCAGAGAAGTGGTTCACCCACG 901245 Query 93893 CCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGA 93952 || |||||||||| ||||| || || ||| ||| ||| |||| || |||||| Sbjct 901244 CCTCCCCGACCCTCTTCAATGCTGGAACCAACAGGCCGCAGCTGTCCAGCTGCTTCCTGC 901185 Query 93953 TGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCA 94012 | | | |||| ||| |||| || || | ||||| || ||| | || || || Sbjct 901184 TCGCCATGAAGGATGACAGCATCGAGGGGATCTACGACACGCTGAAGCATTGCGCCCTCA 901125 Query 94013 TCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCT 94072 |||| |||| || || || || || | ||| | | | | ||| ||| || Sbjct 901124 TCTCCAAATCAGCTGGAGGGATTGGCGTGGCAGTCAGCTGCATTAGATCCACGGGGAGCT 901065 Query 94073 ACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACA 94132 ||||| ||| ||||||||| |||||||| |||||||| ||| | |||| | ||||| Sbjct 901064 ACATCGCCGGCACCAATGGCTGTTCCAACGGGCTCGTCCCAATGTTGAGGGTTTACAACA 901005 Query 94133 ACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATC 94192 || | ||||| || || || ||||| || | || || | ||||| | || | Sbjct 901004 ACACAGCGCGTTATGTTGATCAGGGGGGCAACAAAAGACCCGGCGCCTTCGCCATGTACC 900945 Query 94193 TCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACG 94252 | |||||||||||| || ||| | ||| | || ||| |||||| || || | Sbjct 900944 TGGAGCCCTGGCACTTCGATGTGTTTGACTTCCTGGAGCTGAAGAAGAACACGGGAAAGG 900885 Query 94253 ATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAAC 94312 | | || | ||||| ||||| |||||||| || ||| | || ||||| || ||||| | Sbjct 900884 AGGAGCAGCGAGCCAGGGACCTGTTCTACGCCCTGTGGATCCCTGACCTCTTCATGAAGC 900825 Query 94313 GCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCG 94372 | || ||||| ||| | |||| || | ||||| || || ||||| ||| | Sbjct 900824 GGGTGGAGAACAACGAAGACTGGTCCCTGATGTGTCCGGCCGACTGCCCCGGGCTGGATG 900765 Query 94373 ACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCCA 94432 | || || | |||||||| | || | | || || | |||| | || | Sbjct 900764 AGTGCTGGGGGGAGGAGTTTGAAGAACTCTACACCAGATATGAGAAGGAGGGGAGGGTGA 900705 Query 94433 GGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGG 94492 | || || | ||| | |||| ||| || ||| | || ||| || || | Sbjct 900704 AGCGTGTGGTGAAGGCTCAGCAGCTATGGTATGCAATCATCGAGTCGCAGACAGAAACCG 900645 Query 94493 GTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCG 94552 | ||||| ||||| | | ||| || | |||| ||| |||||||||| | || | Sbjct 900644 GGACGCCGTACATGGTCTACAAAGATGCCTGCAACAGGAAGAGCAACCAGCAGAATCTGG 900585 Query 94553 GGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGA 94612 | |||||| || || || ||||| || || |||||||| ||| ||||||| Sbjct 900584 GCACCATCAAGTGCAGCAACCTCTGCACGGAAATCGTCGAGTACACTAGCAAGGACGAGG 900525 Query 94613 TTGCTGTGTGTAACCTGGGCTC 94634 | || || || || |||| ||| Sbjct 900524 TGGCGGTTTGCAATCTGGCCTC 900503 Score = 131 bits (144), Expect = 2e-25 Identities = 224/318 (70%), Gaps = 8/318 (3%) Strand=Plus/Minus Query 94994 AGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAAGCCCTCGGGTCTGTACGACTGGGAAG 95053 |||||||| | |||| |||| | |||| || ||| ||| |||| |||||| ||| Sbjct 900158 AGGGCATTCTCCAGTACGACATGTGGGAGAAGACGCCAACGGACCTGTGGGACTGG-AAG 900100 Query 95054 CT-CT--ACGCGCTGATGTTATCAAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCA 95110 || || | | | ||| |||||| || |||| ||| ||||| || |||| | Sbjct 900099 CTGCTGAAGGAGAAGATCGC--CAAACATGGCGTGAGGAACAGCCTGCTGCTGTCCCCAA 900042 Query 95111 TGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCT 95170 |||||||||||||||| || |||||||| |||||||||||||| |||| ||| ||| Sbjct 900041 TGCCCACGGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTCCATCGAGGCCTACACAA 899982 Query 95171 CCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTCATCAACAAGCACCTCC 95230 |||| | |||| | | ||||||||| | ||||| || | || ||||| ||||| | Sbjct 899981 GCAACATCTACACCCGCCGGGTGCTCTCGGGGGAGTTTCAGATCGTCAACCCCCACCTGC 899922 Query 95231 TACGGGACCTGACGTCTCTGGGTGTGTGGGGTGACAAGGTCAAGAACCAACTGCTACGC- 95289 | |||||||| ||| ||||| ||| || | |||||||| ||| | ||| Sbjct 899921 TCAAAGACCTGACAGAGAGGGGCCTGTGGAATGAGGAGATGAAGAACCAGCTGAT-CGCT 899863 Query 95290 GCCAACGGCTCCGTCCAG 95307 ||| |||||| ||||| Sbjct 899862 AACAATGGCTCCATCCAG 899845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494673721495960