Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haplochromis_20burtoni_20[refseq_20GCF_5F000239415.1_202011-12-22] 8,001 sequences; 831,411,547 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq113 167 2e-36 >seq113 Length=1687717 Score = 167 bits (184), Expect = 2e-36 Identities = 926/1467 (63%), Gaps = 36/1467 (2%) Strand=Plus/Plus Query 153009 AGGTCATCGATCAAGTACTGGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAA 153068 ||||| | || || || ||||||| | |||||||| |||| | ||| || | Sbjct 899912 AGGTCTTTGAGCAGGTGGGGGTTGACGATCTGAAACTCCCCCGAGAGCACCCGGCGGGTG 899971 Query 153069 TATACATTGCTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTT 153128 || | ||||| ||| | | || | ||| ||||| ||||| || || || || |||| Sbjct 899972 TAGATGTTGCTTGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAG 900031 Query 153129 GCGGTCGGCATGTACGCCACCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCC 153188 || || ||||| | || || || |||| || ||| || || | ||| Sbjct 900032 GCCGTGGGCATTGGGGACAGCAGCAGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCC 900091 Query 153189 TTCAACGCCTGCCAATCCCACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAAC 153248 |||| | || ||| |||||||| ||| || ||| | ||||||||||||||| | Sbjct 900092 TTCAGCAGCTTCCAGTCCCACAGGTCCGTTGGCGTCTTCTCCCACATGTCGTACTGGAGA 900151 Query 153249 ACTCCTCGACTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTG-GGCCAG 153307 | || ||| | || ||| | |||| |||| |||| || | |||||| Sbjct 900152 ATGCCCTTACTCACCGGCGAGCCTTCGTACGTCTCGTAGGTGCCAA-GCTCGGCGGCCAG 900210 Query 153308 TTCGCAGCTAGCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAAC 153367 |||||||| || || | ||| |||| || || || || ||| || | ||||| | Sbjct 900211 CTCGCAGCTCGCTTCCAAAGCGGCATAATACATAGTCTCAAAGATCTGGATGTTGAGCAG 900270 Query 153368 GGCCGCTTCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTG 153427 || || ||| || | || |||| || | ||||| || |||| ||||| Sbjct 900271 TTGAGCCTCGGGGCTTTCAAAGGGATAACGCATAAGGATGAAGGCATCAGCCAATCCCTG 900330 Query 153428 GATACCGACGCCGATGGGTCGATGCTTCTCGTTGCTGCGCCTCGCGCTCGCTATGGGATA 153487 || |||| || || || | || | ||| | ||| || | | || || Sbjct 900331 GACCCCGATTCCTATCGGCCTGTGGCGCATGTTCGACCTCCTGGCTTCTTCCACCGGGTA 900390 Query 153488 GTGATTGCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAG 153547 || ||| ||||||| ||||| | ||| | || | ||||| || | | | Sbjct 900391 GTAGTTGATGTCGATAACCTTGTTCAAGTTCCTGACAATTACTTTGGTCACGGATGCCAA 900450 Query 153548 TTTCTCGAAATCATAGGTCATTTCGTCGACG-CGTACGCATCGATTCACGGCAATAGACG 153606 ||| | || ||||| ||| || | | ||||| || || | || | ||| | Sbjct 900451 TTTTTTAAAGTCATAAGTCCGCTCAGGGGTGACGTAC--ATG--TTGAGAGCGACAGAGG 900506 Query 153607 CCAGATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGT 153666 ||||||| || || ||| ||| || | |||||| ||||| || | |||||||| Sbjct 900507 CCAGATTGCAAACCGCCACCTCGTCCTTGCTAGTGTACTCGACGATTTCCGTGCAGAGGT 900566 Query 153667 TGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGA 153726 ||||||| || ||| ||||| ||| ||||| ||||| || | ||||| || |||||| Sbjct 900567 TGCTGCACTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCATCTTTGT 900626 Query 153727 AGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGAT---AAACCTATGCAGGT 153783 ||| ||||||||| ||||| || |||| |||| ||| | ||| || || | Sbjct 900627 AGACCATGTACGGCGTCCCGGTTTCTGTCTGCGACTCGATGATTGCATACC-AT--AGCT 900683 Query 153784 CCTGCGC--TC-GCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTC 153840 ||| || || ||| |||| | | ||||| |||| |||| ||| ||| Sbjct 900684 GCTGAGCCTTCACCACACGCTTC---ACCCTCCCCTCCTTCTCATATCTGGTGTAGAGTT 900740 Query 153841 GCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCG 153900 |||||||| || || |||| || | || ||||| || | |||||||||||| | Sbjct 900741 CTTCAAACTCCTCCCCCCAGCACTCATCCAGCCCGGGGCAGTCGGCCGGACACATCAGGG 900800 Query 153901 ACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACA 153960 |||| |||| | | || || |||||| || || || | ||| || ||||| | Sbjct 900801 ACCAGTCTTCGTTGTTCTCCACCCGCTTCATGAAGAGGTCAGGGATCCACAGGGCGTAGA 900860 Query 153961 TGAGGTCGC--GCGCCTTGCAATCCTCCGCGCCCATGTTGCGTTTCAGATTGAGCACGCT 154018 ||||| | || | ||| |||||| ||| |||| ||||| | || | | Sbjct 900861 ACAGGTCCCTGGCTCGCTGC--TCCTCCTTTCCCGTGTTCTTCTTCAGCTCCAGGAAGTC 900918 Query 154019 ATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACC---TTTACGCTTTCC 154075 | | | ||| ||||||||| || | ||| | ||| | ||| || | | || || Sbjct 900919 AAACACATCGAAGTGCCAGGGCTCCAGGTACATGGCGAAGGCGCCGGGTCTTTTGTTGCC 900978 Query 154076 GCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCT 154135 |||||||| || | ||| | | |||||| | || | || ||| || | || ||| | Sbjct 900979 CCCCTGATCAACATAACGCGCTGTGTTGTTGTAAACCCTCAACATTGGGACGAGCCCGTT 901038 Query 154136 TGCGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTA-- 154193 | ||| ||||| ||| | ||| || || | | | ||||| | | Sbjct 901039 GGAACAGCCATTGGTGCCGGCGATGTAGCTCCC-----CGTGGATCTAATGCAGCTGACT 901093 Query 154194 ---ACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAGTCGCCCAGCGTCCTGTAG 154250 |||||||| || || | | || || ||| ||||| | |||||| |||| Sbjct 901094 GCCACGCCAATCCCTCCAGCTGATTTGGAGATGAGGGCGCAATGCTTCAGCGTGTCGTAG 901153 Query 154251 ATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGAATG 154310 || || |||||||| || || | | |||||| ||| || ||| ||||| || Sbjct 901154 ATCCCCTCGATGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCTG 901213 Query 154311 CGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATCATG 154370 ||||| || |||||||| || ||||| || ||| || | || || | Sbjct 901214 TTGGTTCCAGCATTGAAGAGGGTCGGGGAGGCGTGGGTGAACCACTTCTCTGACAGCAGG 901273 Query 154371 CGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATG 154430 ||| || |||||| | |||||||||| ||||| || || | || || | |||| Sbjct 901274 TTGTAGGTCTCGATGACTGCTTCGATATCCGTCCCGTGGATTCCCACAGCCACCCTCATG 901333 Query 154431 AGCATGTGCTGCGGACGTTCGGCGACT 154457 ||||||||||||||||| || || ||| Sbjct 901334 AGCATGTGCTGCGGACGCTCAGCTACT 901360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496212767556720