Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haplochromis_20burtoni_20[refseq_20GCF_5F000239415.1_202011-12-22] 8,001 sequences; 831,411,547 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq249 118 2e-21 seq100 89.7 7e-13 seq18 87.8 3e-12 >seq249 Length=906947 Score = 118 bits (130), Expect = 2e-21 Identities = 170/240 (71%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 8936 GCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCC 8995 ||||| || || | ||| || || || || |||||||||||||| ||||||||| || Sbjct 209311 GCGGTGTTGACCACGTCGAAGCCGACTGTGCCTCCGAAGGTGCTGGGCTTCCAGTACTCC 209252 Query 8996 GGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATG 9055 |||||||||||| || |||| || || || | ||| || |||||||||| ||| | Sbjct 209251 GGGGAGCAGATGGGATTTCCCATTAGGCCCTTGAGGGAGAAAGGAGCCCCCATCTCCACC 209192 Query 9056 ATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGT 9115 || | || || |||||| | | | || || || || | | ||| | |||||| Sbjct 209191 ATTGTTTCCCCAAAGATGCCGTTATGTCTGGGCTTCTCCACCAGCAGGCCCGGGTAGAGC 209132 Query 9116 TCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || ||||| ||||||| || || || | |||| | | ||||| || || ||||| ||| Sbjct 209131 TCCACAGCATCGACGTGCCCGTACAGCTCCTCCAGCACCGCAGCCATTTCTTTCTCCCCT 209072 Score = 107 bits (118), Expect = 3e-18 Identities = 182/260 (70%), Gaps = 4/260 (2%) Strand=Plus/Minus Query 9432 CCGACCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAG 9491 ||| ||||||||||| | ||||| || || || | | | || ||||||| | | | Sbjct 208241 CCGTCCGGCAATCTGATTGGTGAAGGACTCCACCAGGTTGCTGATGCCGTGCTCGGTCAC 208182 Query 9492 GATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATC 9551 || || ||||| | || || || | ||| | || | | || | ||| | ||| Sbjct 208181 GACAGAGGTGTTGAAGACAAACTGCTTGTAGCTGTAATCTGTCTCCTCAATGTGGAAACT 208122 Query 9552 ATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTG 9611 ||| |||| ||||| |||||| |||| ||||| |||||||| | || || |||||||| Sbjct 208121 ATCGGGCATCAGAGGGTGCCAGTGGTAAAGGGTGTTGAACTCAGATGCAATGCGGTTCTG 208062 Query 9612 GTACTGAAAG-GC-GGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTAC 9669 |||||| ||| || ||| || || | ||| |||||||| | || | |||||| || Sbjct 208061 GTACTGGAAGCGCTGGT--TAAAGAGCAGCTCGGGGTCAAACTTGAGTTTGAAGTGATAG 208004 Query 9670 CCGCTGAGTTGCTGGACATA 9689 ||||| || ||||| || || Sbjct 208003 CCGCTCAGATGCTGCACGTA 207984 Score = 89.7 bits (98), Expect = 7e-13 Identities = 204/301 (68%), Gaps = 21/301 (7%) Strand=Plus/Minus Query 9964 ACCTGATACTTCATCTTCCCATCCTTGAACAGACGCAGCTTATGCTGCTTCTCCAACGTT 10023 |||||||| |||| ||| ||||||||||| || | |||||| |||||||| |||| | Sbjct 207272 ACCTGATATTTCAGCTTGCCATCCTTGAAGAGTCTCAGCTTGTGCTGCTTTTCCAGGTTG 207213 Query 10024 TCGCCGTAGATGTGACTGAGATCGACCTGCGAGAGAACGAAGAC-TGTCGAT---AAC-- 10077 || ||||||||||| |||| || |||| || || || ||||| | | || ||| Sbjct 207212 TCACCGTAGATGTGGTTGAGGTCCACCT--GACAGCAC-AAGACACGCCAATTAAAACTG 207156 Query 10078 GGCCTTGTTCGaaaaa---------tcaaaaaaCCCAACCATCGCCGTTCGCTCTTACCC 10128 || | || || | ||||||| | | | | | | || | ||||||| Sbjct 207155 GGTCACATTAAAATGAGTTTGCTTTTCAAAAACCGGGATCTT--CAGCTC-CACTTACCC 207099 Query 10129 CATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAAAAATTGGT 10188 |||| ||| | |||||||| || |||| | ||| || | | || || |||| Sbjct 207098 CATGACCCTTAGCAACAGTGAAAGCAGGCCCTCTCTTCATGTCAGATTTGAAGAACTGGT 207039 Query 10189 GTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATCGGGGATAA 10248 | || ||||| || |||| || || ||||||| |||||||||| || || || |||| Sbjct 207038 GGGTGAAGTGCTGTGCGAAGAAGGCAAACATCAAACTGGTGCCCTGCGGGTCTGGTATAA 206979 Query 10249 A 10249 | Sbjct 206978 A 206978 >seq100 Length=1875368 Score = 89.7 bits (98), Expect = 7e-13 Identities = 144/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 8963 TCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAGC 9022 || || || ||||||||||| |||||||| | || |||||||| ||| | | || Sbjct 94808 TCTCCTCCAAAGGTGCTGGGCTTCCAGTATTCAGGCGAGCAGATTGGGTTTCCAAGCAGG 94749 Query 9023 CCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGGA 9082 ||||||| ||||| ||||| |||| ||| | |||||||| || || ||||| ||| Sbjct 94748 CCTTTCAGTGAAAAGGGAGCACCCATCTCCACCATGCTCTCTCCAAAAATGGCTTTAGGA 94689 Query 9083 CGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAGG 9142 || ||| || | || | ||| | ||| | || | || || | ||| |||||||| Sbjct 94688 CGGATTTTCTCTAGCATTATGCCTGGGTAAAACTCCAGGGCGTCTATGTCACCATAGAGC 94629 Query 9143 GCTTCCAA--CTCGGCAGCTATCTC 9165 |||| || ||||| ||||| || Sbjct 94628 TCTTCTAAACCTCGG--GCTATTTC 94606 >seq18 Length=3650284 Score = 87.8 bits (96), Expect = 3e-12 Identities = 155/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 8942 TTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAG 9001 || || || || || || || | || || ||||||||||| |||||||| |||| ||| Sbjct 2577337 TTTACTATTTCAAAGCCCACCTTTCCTCCAAAGGTGCTGGGCTTCCAGTATTCCGGAGAG 2577396 Query 9002 CAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTC 9061 || || ||| ||| ||| ||||| | ||| || || || |||| ||| | ||||| Sbjct 2577397 CATATAGGGTTTCCCAGGAGGCCTTTAAGGGAGAAGGGGGCACCCATCTCCACCATGCTT 2577456 Query 9062 TCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACA 9121 || || || ||||| || | || | ||| || | | ||||| | ||| | ||| | Sbjct 2577457 TCTCCAAATATGGCCCCCGCTCGTGTTTTCTCCAACAACAAGCCGGGGTAAAATTCCAGT 2577516 Query 9122 GCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCT 9167 || || | ||| | ||||| |||| | || |||||||||| Sbjct 2577517 GCGTCAATGTCATCGTAGAGCTCTTCGAGGTCTCGTGCTATCTCCT 2577562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723655618153400