Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haplochromis_20burtoni_20[refseq_20GCF_5F000239415.1_202011-12-22] 8,001 sequences; 831,411,547 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq113 187 3e-42 seq2861 86.0 8e-12 seq230 86.0 8e-12 seq19 82.4 9e-11 >seq113 Length=1687717 Score = 187 bits (206), Expect = 3e-42 Identities = 838/1301 (64%), Gaps = 34/1301 (3%) Strand=Plus/Plus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 ||||||||| | ||||| | ||| | | |||| ||||| |||| ||| ||||| |||||| Sbjct 899972 TAGATGTTGCTTGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAG 900031 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCC 116022 || |||||||| || | || || |||||||| | | || || ||| Sbjct 900032 GCCGTGGGCATTGGGGACAGCAGCAGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCC 900091 Query 116023 TTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGG 116082 || || | |||||| | | | ||| | | ||||||||| || ||||||| Sbjct 900092 TTCAGCAGCTTCCAGTCCCACAGGTCCGTTGGCGTCTTCTCCCACATGTCGTACTGGAGA 900151 Query 116083 ATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGC---C 116139 || || | | | ||||| || || | ||||| || | ||| || ||| || | Sbjct 900152 ATGCCCTTACTCACCGGCGAGCCTTCGTACGTCTCGTAGGTGCC---AAGCTCGGCGGCC 900208 Query 116140 AATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATT 116199 | ||| ||||||| || | || || | |||||| |||||||| || | || | Sbjct 900209 AGCTCGCAGCTCGCTTCCAAAGCGGCATAATACATAGTCTCAAAGATCTGGATGTTGA-- 900266 Query 116200 GCC-TTG-GCCTCGTCGGAATCAAACGCGAGACGGCACAAA-ATAAATACATCCGCGAGA 116256 || ||| |||||| | ||||| | || | ||| || || || |||| || | Sbjct 900267 GCAGTTGAGCCTCGGGGCTTTCAAAGG-GATAACGCATAAGGATGAAGGCATCAGCCAAT 900325 Query 116257 CCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACG 116316 || ||||| |||| || || || | || | ||| || ||| | | || ||||| Sbjct 900326 CCCTGGACCCCGATTCCTATCGGCCTGTGGCGCATGTTCGACCTCCTGGCTTCTTCCACC 900385 Query 116317 GGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCA 116376 || || | || | ||||||||| | || | || || | || || || | | Sbjct 900386 GGGTAGTAGTTGATGTCGATAACCTTGTTCAAGTTCCTGACAATTACTTTGGTCACGG-A 900444 Query 116377 TGAAGCTTTTCGTAA-TCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGAT 116435 || |||| || ||| || | || ||| |||| ||| | || |||| Sbjct 900445 TGCCAATTTTTTAAAGTCATAAGTCCG---CTCAGGGGTGACGTACATGTTGAGAGCGAC 900501 Query 116436 TGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACA 116495 || |||||||| || || | ||| ||||| ||||||||| | |||||||| || Sbjct 900502 AGAGGCCAGATTGCAAACCGCCACCTCGTCCTTGCTAGTGTACTCGACGATTTCCGTGCA 900561 Query 116496 CAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATC 116555 | || | ||| |||||||||| |||| || || ||| |||| || ||||| Sbjct 900562 GAGGTTGCTGCACTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCATC 900621 Query 116556 CTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATAC 116615 ||||||| ||| || |||||||| || || || || |||| || || || | ||||| Sbjct 900622 TTTGTAGACCATGTACGGCGTCCCGGTTTCTGTCTGCGACTCGATGATTGCATACCATAG 900681 Query 116616 AT-CGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGG 116674 | | | | || || || || | | |||||||| ||| || | |||||||| Sbjct 900682 CTGCTGAGCCTTCACCACACGC-TTCACCCTCCCCTCCTTCTCATATCTGGTGTAGAGTT 900740 Query 116675 CCTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGA 116733 | |||||||| || ||| |||| ||| ||||| || | | ||||| | || Sbjct 900741 CTTCAAACTCCTCCCCC-CAGCACTCATCCAGCCCGGGGCAGTCGGCCGGACACATCAGG 900799 Query 116734 GACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAG 116793 ||||| | | | ||| |||||||||||||||||||| |||||||| || || || Sbjct 900800 GACCAGTCTTCGTTGTTCTCCACCCGCTTCATGAAGAGGTCAGGGATCCACAGGGCGTAG 900859 Query 116794 AAGAGATCCCGACAGCGA-GCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTC 116852 || || |||| || ||| || | | ||| || || || ||||| ||||| Sbjct 900860 AACAGGTCCCTGGCTCGCTGCTCCTCCTTTCCCGTG-TTCTTCTTCAGCTCCAGGAAGTC 900918 Query 116853 CATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC----CTTGCGACGAC 116908 | | ||| |||||| || |||||||||| |||| | || ||| | | | Sbjct 900919 AAACACATCGAAGTGCCAGGGCTCCAGGTACATGGCGAAGGCGCCGGGTCTTTTGTTGCC 900978 Query 116909 CAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCAT 116968 | |||| | ||||| | ||| || ||| | || | | |||||| | || || | Sbjct 900979 CC-CCTGATCAACATAACGCGCTGTGTTGTTGTAAACCCTCAACATTGGGACGAGCCCGT 901037 Query 116969 CAGATTGGCCATTTGTCCCC-CGAATACGAGACTTGTTGGCTCTGA--CATCGTGGATGT 117025 || |||||| || || ||| | | || || ||| | || | || || Sbjct 901038 TGGAACAGCCATTGGTGCCGGCGATGTAGCTCCCCGT-GGATCTAATGCAGC-TGACTGC 901095 Query 117026 GCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGA 117085 || ||||| || || || | || ||||| | ||||| | | | || || |||||| Sbjct 901096 -CACGCCAATCCCTCCAGCTGATTTGGAGATGAGGGCGCAATGCTTCAGCGTGTCGTAGA 901154 Query 117086 TCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTG 117145 |||| ||||| |||| |||| | |||| ||||||||||| |||| || ||||| Sbjct 901155 TCCCCTCGATGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCTGT 901214 Query 117146 GTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAAC 117186 || ||||| ||||||||||| || | |||||| ||||| Sbjct 901215 TGGTTCCAGCATTGAAGAGGGTCGGGGAGGCGTGGGTGAAC 901255 >seq2861 Length=8583 Score = 86.0 bits (94), Expect = 8e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598 ||||||| | | |||||| || || |||||| ||| || ||||| || || | ||||| Sbjct 6308 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 6249 Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACA 127648 ||| |||||| || || || || || ||||||||||||||||||||| Sbjct 6248 TCAGCCAGAAGATGGCGGCGAACGAACCCGAGAAGAAGATCCCCTCCACA 6199 >seq230 Length=973959 Score = 86.0 bits (94), Expect = 8e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598 ||||||| | | |||||| || || |||||| ||| || ||||| || || | ||||| Sbjct 832638 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 832697 Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACA 127648 ||| |||||| || || || || || ||||||||||||||||||||| Sbjct 832698 TCAGCCAGAAGATGGCGGCGAACGAACCCGAGAAGAAGATCCCCTCCACA 832747 >seq19 Length=3626725 Score = 82.4 bits (90), Expect = 9e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598 ||||||| | | ||||| || || ||| ||| || || ||||| | |||| ||||| Sbjct 2022406 CCTCGTCCCTGCTAATGAGCTCGTTGGAGTAGCTAAGGCCAGGCATTAACCCCCTCTTCT 2022347 Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACA 127648 ||| |||| | || ||| |||||| |||||||||||||| || |||||| Sbjct 2022346 TCAGCCAGTAGATAGCAGCAAATGAACCAGAGAAGAAGATGCCTTCCACA 2022297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613445841611160