Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haplochromis_20burtoni_20[refseq_20GCF_5F000239415.1_202011-12-22] 8,001 sequences; 831,411,547 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq113 158 2e-33 seq47 89.7 8e-13 >seq113 Length=1687717 Score = 158 bits (174), Expect = 2e-33 Identities = 343/508 (68%), Gaps = 4/508 (1%) Strand=Plus/Plus Query 204103 GATCGAGCCGTTGTCGGCCATCAGTCTCATCCTCGTCTCCTCCCCCCACATGCCCAAC-C 204161 ||| ||||| |||| || ||||| || || ||||||| ||||| |||| | | Sbjct 899848 GATGGAGCCATTGTTAGCGATCAGCTGGTTCTTCATCTCCTCATTCCACAGGCCCCTCTC 899907 Query 204162 TGATCAGCTCCCGCACCAGGTGGGGGTTGATGATCTGAAAGTCTCCGGACAGCACCCCTC 204221 || |||| || | |||||||||||||| ||||||||| || || || ||||||| | Sbjct 899908 TG-TCAGGTCTTTGAGCAGGTGGGGGTTGACGATCTGAAACTCCCCCGAGAGCACCCGGC 899966 Query 204222 GGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGG 204281 ||||| | | |||| | ||| | | |||| | |||||||||||| | ||||| |||| Sbjct 899967 GGGTGTAGATGTTGCTTGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGG 900026 Query 204282 TGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTTGCGCACACCGTATTTTTGGACCC 204341 || |||||||||||| || | ||| |||||| ||| | ||| || | ||| || | Sbjct 900027 TGGAGGCCGTGGGCATTGGGGACAGCAGCAGGCTGTTCCTCACGCCATGTTTGGCGATCT 900086 Query 204342 TGCGCTTCAGAGAGGTCCAGTCGTGCATCGCACTGGGTTTCACGCCCCACATGTCGAACT 204401 | |||||| ||||||| || | | || || ||||||||||| ||| Sbjct 900087 TCTCCTTCAGCAGCTTCCAGTCCCACAGGTCCGTTGGCGTCTTCTCCCACATGTCGTACT 900146 Query 204402 GAAAGATGCCTTGACTGACTGGGCTGCCCTTGTACGTCGGATAAGGCTGATCCTCTTCTG 204461 | | ||||| | ||| || || ||| | ||||||| || | | ||| | | Sbjct 900147 GGAGAATGCCCTTACTCACCGGCGAGCCTTCGTACGTCTCGTAGGTGCCAAGCTCGGCGG 900206 Query 204462 CCAGCTTGCACGAGGCGGCCATGGCGTGATAGTACATGGTCTCAAAGATCTGAACGTTTA 204521 |||||| ||| || ||| ||| ||| ||||| |||||||||||||| | | || Sbjct 900207 CCAGCTCGCAGCTCGCTTCCAAAGCGGCATAATACATAGTCTCAAAGATCTGGATG-TTG 900265 Query 204522 ATCTGGCG-GCCTCCGTTCCGTCAAACGCCAGACCCAGCATGGCAAACACGTCCGCCAAG 204580 | | | | ||||| | | ||||| | || || | | || | || ||||| Sbjct 900266 AGCAGTTGAGCCTCGGGGCTTTCAAAGGGATAACGCATAAGGATGAAGGCATCAGCCAAT 900325 Query 204581 CCCTGCACTCCGATTCCCAACGGTCTGT 204608 ||||| || |||||||| | ||| |||| Sbjct 900326 CCCTGGACCCCGATTCCTATCGGCCTGT 900353 >seq47 Length=2629205 Score = 89.7 bits (98), Expect = 8e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 203914 CTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAAT 203973 || ||| || || | ||||||| | ||||| | ||| || || || |||||||| Sbjct 773835 CTTCCAGCCATAGAAGTGCATGCTACTAAGTTTTCCATAGTTTGGCTCAGCAATGTGAAT 773894 Query 203974 GTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCATATTGATAATGGT 204033 ||| || |||||||||||||| ||| | | | |||||||| ||||| |||| | || Sbjct 773895 GTTAAGCGACTGGCTTTGGTCAATGTATGCACCACGATCTGCTGCCATCTTGAGGACCGT 773954 Query 204034 CTTCTGCGAAATCTCCCACACCGTCTT 204060 |||||| || || |||||||| || || Sbjct 773955 CTTCTGGGAGATTTCCCACACAGTTTT 773981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795075674540560