Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haplochromis_20burtoni_20[refseq_20GCF_5F000239415.1_202011-12-22] 8,001 sequences; 831,411,547 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq2861 111 2e-19 seq230 111 2e-19 seq19 95.1 1e-14 >seq2861 Length=8583 Score = 111 bits (122), Expect = 2e-19 Identities = 101/126 (80%), Gaps = 1/126 (1%) Strand=Plus/Minus Query 133274 GCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCT 133333 |||| ||||| || || ||||||||||||||||||||||| || ||||||| |||||| Sbjct 5685 GCTC-ACCAGGTTCTCATTGACGATGCCGTCGCTGGCGGCAAAGAAGGCCAACACGTGGG 5627 Query 133334 TGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGT 133393 |||||| | |||||| | ||| |||| | ||||||| || |||||||||||| | Sbjct 5626 AGATGAAGTAGCGCTCTTCGTCCTTCATGGCATCCCAGTGCTGCAGGTCCTTGGACAGAT 5567 Query 133394 CCACCT 133399 |||||| Sbjct 5566 CCACCT 5561 Score = 105 bits (116), Expect = 7e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 ||||||| ||| ||||| |||||| ||| |||| ||||||||| ||||| | || | Sbjct 6308 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 6249 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | ||||| || ||||||||||| ||||| ||||||| ||||| || || || || | Sbjct 6248 TCAGCCAGAAGATGGCGGCGAACGAACCCGAGAAGAAGATCCCCTCCACAGCGGCAAAGG 6189 Query 133037 CCACCAGGCGCTCGCC 133052 |||||| |||||| || Sbjct 6188 CCACCACGCGCTCTCC 6173 >seq230 Length=973959 Score = 111 bits (122), Expect = 2e-19 Identities = 101/126 (80%), Gaps = 1/126 (1%) Strand=Plus/Plus Query 133274 GCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCT 133333 |||| ||||| || || ||||||||||||||||||||||| || ||||||| |||||| Sbjct 833261 GCTC-ACCAGGTTCTCATTGACGATGCCGTCGCTGGCGGCAAAGAAGGCCAACACGTGGG 833319 Query 133334 TGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGT 133393 |||||| | |||||| | ||| |||| | ||||||| || |||||||||||| | Sbjct 833320 AGATGAAGTAGCGCTCTTCGTCCTTCATGGCATCCCAGTGCTGCAGGTCCTTGGACAGAT 833379 Query 133394 CCACCT 133399 |||||| Sbjct 833380 CCACCT 833385 Score = 105 bits (116), Expect = 7e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 ||||||| ||| ||||| |||||| ||| |||| ||||||||| ||||| | || | Sbjct 832638 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 832697 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | ||||| || ||||||||||| ||||| ||||||| ||||| || || || || | Sbjct 832698 TCAGCCAGAAGATGGCGGCGAACGAACCCGAGAAGAAGATCCCCTCCACAGCGGCAAAGG 832757 Query 133037 CCACCAGGCGCTCGCC 133052 |||||| |||||| || Sbjct 832758 CCACCACGCGCTCTCC 832773 >seq19 Length=3626725 Score = 95.1 bits (104), Expect = 1e-14 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 133394 CCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCG 133453 |||||||||| |||||||| || || |||| ||| | ||||||||| |||| ||||| Sbjct 2020205 CCACCTCCTCCACGGTCCAGAAAGAGGCCTGGGCCTGTTTGTACATCTTCCAGATGTCTC 2020146 Query 133454 AATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCGCGCAACAGCGGCTC 133508 || || ||||||||||| |||||||| | |||||| || || | ||| || || Sbjct 2020145 GGTACTGGATGGGAAAAATGACAAACCGCCTGGGGTTCTCTCGGAGCAGAGGTTC 2020091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500122776467840