Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haplochromis_20burtoni_20[refseq_20GCF_5F000239415.1_202011-12-22] 8,001 sequences; 831,411,547 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq8 307 8e-78 seq235 93.3 3e-13 seq1268 89.7 4e-12 >seq8 Length=5219019 Score = 307 bits (340), Expect = 8e-78 Identities = 956/1467 (65%), Gaps = 12/1467 (1%) Strand=Plus/Plus Query 517249 TTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAAT 517308 ||| || |||| | ||||| ||||| || |||||||| | ||||||||| || || || Sbjct 3766119 TTTGTCCACGGCGGATACATTTAGAATGCCGTTGGCATCAATATCAAATGTTACCTCTAT 3766178 Query 517309 TTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATT 517368 || || || |||| |||| || ||||| ||| | | |||| | |||||| || Sbjct 3766179 CTGTGGAACACCTCGGGGAGCTGGAGGGATACCTGTGAGGTCAAATTTGCCCAGAAGGTT 3766238 Query 517369 ATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATT 517428 || | ||| || | || || || || || | || || || | | || || Sbjct 3766239 GTTGTATTTGGTCATGGCTCTCTCGCCTTCAAATACCTGAATCAATACACCTGGCTGGTT 3766298 Query 517429 ATCTGAATAAGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAA 517487 |||||| || || | || | |||| | | || || ||||| ||||||| | | Sbjct 3766299 ATCTGAGTATGTGGAGAAGA-TCTGAGTCTGCTTTGTGGGGATTGTGGTGTTTCGCTTTA 3766357 Query 517488 TAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAA 517547 | | | ||||||| ||| ||||| ||||| | || ||||| || |||| |||||| | Sbjct 3766358 TCAGAGGTGTCATAACACCGCCTGCGGTTTCAATGCCCAGAGACAGGGGAGCGACATCCA 3766417 Query 517548 CTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAG 517607 || | | || ||| | || || || | || | || || |||||||| | | Sbjct 3766418 GCAGCAGCAGATCTTGGACATTCTCTGAGGTGTCGCCCATGAGGATGGCTGCTTGGACTG 3766477 Query 517608 CAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGA 517667 | ||||| || || ||||||||||| || |||| | | || || | ||| ||||| | Sbjct 3766478 CTGCACCGTAGGCTACAGCTTCATCTGGGTTAATGCTCTTGTTCAGGTCTTTGCCATTAA 3766537 Query 517668 AAAAATT-TGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACA 517726 | || | || |||| || | | || ||||| | | || || || || | ||| Sbjct 3766538 AGAAGTCCTGTAAGAGCTTCTGG-ATTTTGGGAATTCTTGTGGAGCCACCGACCAGGACA 3766596 Query 517727 ATTTCATGCA-CCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTC 517785 |||||||| | |||| ||||||||||| || | |||| | |||| ||||| || | Sbjct 3766597 ATTTCATGAATCCTG-GATTTATCCAGCTTGGCATCCTGCAGGGCTTTCTCAACTGGGCC 3766655 Query 517786 AAGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGAC 517845 ||| | || || | ||||| || || || || || || || | | | Sbjct 3766656 AAGTGTTCCCCTGAAAAGATCTGAGTTGAGCTCCTCAAAACGTGCCCTTGTGATGGAGGT 3766715 Query 517846 ATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGA 517905 | | |||||||||| || || | ||| || | ||||| | | ||||| || || Sbjct 3766716 GTAAAAATCAATTCCCTCAAAGAGAGAGTCGATCTCAATGCTTGCCTGAGTGCTGGAGGA 3766775 Query 517906 TAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG 517965 || | | || || | ||||| ||||| | | ||| | | ||| | || ||| Sbjct 3766776 TAAGGTCCTCTTTGCCCTCTCACAAGCTGTACGCAATCTCCTCACTGCTCT--CTTATTC 3766833 Query 517966 ATTCAAATCTGTTT--TATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGA 518023 | ||| | || ||| |||||| || || || || ||| | | || | | Sbjct 3766834 TGGCTAATGTCCTTCTTATGTTTTCTTTTAAATTCCTCTACAAAGTGCTTGACCATTTGG 3766893 Query 518024 TTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGT 518083 || ||||| || || || || | | || | |||||| || ||| | || | || | Sbjct 3766894 TTGTCAAAGTCCTCCCCACCAAGGTGTGTGTCTCCTGAAGTGGCTTTGACCTCAAAGATG 3766953 Query 518084 CCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGT 518143 ||| |||||| | || || || |||||| ||| || || || | |||||| || || Sbjct 3766954 CCAGCTTCAATGGTCAGAATAGACACATCAAAGGTGCCTCCGCCAAGATCAAAGATCAGC 3767013 Query 518144 ACATTCATTTCTT-TGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGG 518202 ||||| |||| ||| ||| ||| ||| || ||||| |||| || || || || || Sbjct 3767014 ACATTGCGTTCTCCTGTTTTGCCTTT-ATCCAGGCCATATGCAATGGCTGCTGCTGTGGG 3767072 Query 518203 TTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTG 518262 |||||||| || |||| |||||| || |||| || || ||||| || || ||||| Sbjct 3767073 CTCATTAATGATCCTCAGAACATTTAGTCCAGAGATCACCCCAGCATCCTTGGTAGCTTG 3767132 Query 518263 TCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACC 518322 ||| || || ||||| ||||| || || || || || || || | | || || || Sbjct 3767133 TCTCTGGGAGTCGTTGAAATAAGCTGGCACTGTGATGACTGCGTTTGACACCCTTTGTCC 3767192 Query 518323 AATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGG 518382 | || || || | | ||||||||| | | ||| || ||||||| || || Sbjct 3767193 CAGGTAGGCCTCAGCTATCTCCTTCATTTTAACCAGGACCATGGAGGAAATTTCCTCAGG 3767252 Query 518383 GGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATT 518442 | || ||||| || || ||| || | | | || || | | | | Sbjct 3767253 ATAGAATGCCTTGGTCTCCCCTTTGTATTCCACCTGGACTTTGGGCTTTCCATTATCGTC 3767312 Query 518443 AATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCT 518502 ||| || || || |||||| ||||| || || || || | |||||||||| | ||| Sbjct 3767313 AATCACCTTGAAAGGCCAGAGCTTCATGTCGGACTGTACGACTGGGTCATTAAACTTTCT 3767372 Query 518503 ACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTT 518562 ||||| | ||||| |||||||| || || || | || || |||||| |||| | || Sbjct 3767373 TCCAATCAGCCGTTTGGCATCAAAGATTGTGTTATTGGGGTTCATTGCAACTTGGTTCTT 3767432 Query 518563 GGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCG 518622 ||| ||||||||||| || |||||| || ||||| | ||||| |||||| || | Sbjct 3767433 GGCAGCATCTCCAATAAGCCTTTCTGTGTCGGTAAAAGCCACATAGCTTGGAGTGGTTCT 3767492 Query 518623 ATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACT 518682 ||| || ||||| || ||||| || |||||||| |||| || | || || |||||| Sbjct 3767493 ATTGCCCTGATCGTTGGCAATGATCTCAACTTTGCCATGCTGGAAAACCCCAACACAAGA 3767552 Query 518683 AAAAGTTGTTCCTAAATCAATACCAAT 518709 | | || || || | |||||| ||||| Sbjct 3767553 ATAGGTGGTGCCCAGATCAATGCCAAT 3767579 >seq235 Length=965616 Score = 93.3 bits (102), Expect = 3e-13 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| || || ||||| |||| |||||||| || || ||||| || || | | ||| Sbjct 552626 TTTTTGTCCAGGCCATAGGCAATGGCAGCAGCGGTGGGCTCATTGATGATACGAAGGACA 552685 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 ||||| |||| ||| | ||||||||||| ||||| || | || || ||||| || || Sbjct 552686 TTAAGCCCAGAAATGGTCCCTGCATCTTTGGTGGCCTGGCGCTGAGAGTCGTTGAAGTAG 552745 Query 518285 GCAGGAACAGTAATAACGGCATCAGTTAC 518313 ||||| ||||| | ||| || ||||| Sbjct 552746 GCAGGCACAGTCACTACGACACTTGTTAC 552774 Score = 87.8 bits (96), Expect = 1e-11 Identities = 131/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 518523 CAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 518582 |||| || || ||| |||| || | || |||| | ||||||||||| |||||||| Sbjct 553262 CAAATATTGTGTTGTTTGGGTTCAAGGCCACTTGGTTCTTGGCTGCATCCCCAATCAGCC 553321 Query 518583 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 518642 ||||| || || |||| |||||| || || || | || || || ||||| |||| Sbjct 553322 TCTCTGTGTCAGTGAATGCAACATAGCTGGGTGTAGTCCTGTTTCCCTGGTCATTGGCAA 553381 Query 518643 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 518702 | ||||| ||||| |||| || | || |||||||| | || || || | |||| Sbjct 553382 TGATTTCCACTTTGCCATGCTGAAAAACTCCTACACAGGAGTAGGTAGTGCCCAGGTCAA 553441 Query 518703 TACCAA 518708 |||||| Sbjct 553442 TACCAA 553447 >seq1268 Length=63628 Score = 89.7 bits (98), Expect = 4e-12 Identities = 130/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 518523 CAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 518582 |||| | ||| |||||||| || || || | || | ||||| ||||||||||| || Sbjct 43129 CAAATACAGTGTTGGTTGGGTTCATAGCCACCTGGTTCTTGGCGGCATCTCCAATAAGTC 43188 Query 518583 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 518642 ||||| ||||| || | ||||| || || || | || ||||| ||||| |||| Sbjct 43189 TCTCTGTGTCTGTGAAAGCCACATAACTGGGTGTCGTCCTGTTTCCTTGGTCATTAGCAA 43248 Query 518643 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 518702 | || || ||||| |||| || | | |||||||| | | || || |||| ||||| Sbjct 43249 TGATCTCCACTTTGCCATGCTGGAAGATTCCTACACAGGAATATGTGGTGCCTAGATCAA 43308 Query 518703 TACC 518706 |||| Sbjct 43309 TACC 43312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780425364024706