Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haplochromis_20burtoni_20[refseq_20GCF_5F000239415.1_202011-12-22] 8,001 sequences; 831,411,547 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq113 140 4e-28 seq2861 87.8 2e-12 seq230 87.8 2e-12 >seq113 Length=1687717 Score = 140 bits (154), Expect = 4e-28 Identities = 936/1485 (63%), Gaps = 30/1485 (2%) Strand=Plus/Minus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| ||||| ||||| |||| || | || ||||| ||| ||||| || | || Sbjct 901347 CCGCAGCACATGCTCATGAGGGTGGCTGTGGGAATCCACGGGACGGATATCGAAGCAGTC 901288 Query 111672 TTGGAGACATACGACAAGATGTCCC-GTGGTATGTTCATCCACGCAACACCAACCCTCTT 111730 | ||||| ||| || | |||| | || ||||| |||||| | || |||||||| Sbjct 901287 ATCGAGACCTACAACCTGCTGTCAGAGAAGTG-GTTCACCCACGCCTCCCCGACCCTCTT 901229 Query 111731 CAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGA 111790 ||| ||||| || || || || ||||||| || ||||| | || | ||||| || Sbjct 901228 CAATGCTGGAACCAACAGGCCGCAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAGGATGA 901169 Query 111791 TTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGG 111850 ||| | || || |||| ||| || | | || |||| ||||| || | ||||| Sbjct 901168 CAGCATCGAGGGGATCTACGACACGCTGAAGCATTGCGCCCTCATCTCCAAATCAGCTGG 901109 Query 111851 TGGTATCGGGATGCACATCCATGATG--TCAGAGCCAACAAGTCTCGTATTAGAGGTACA 111908 || || || || || || | || | ||| ||| | || || || Sbjct 901108 AGGGATTGGCGTGG-CAGTCA-GCTGCATTAGATCCACGGGGAGCTACATCGCCGGCACC 901051 Query 111909 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 111968 ||||| || | || | | |||||| | | || | ||| ||||||||| ||| Sbjct 901050 AATGGCTGTTCCAACGGGCTCGTCCCAATGTTGAGGGTTTACAACAACACAGCGCGTTAT 900991 Query 111969 GTAAACCAAGCTGGGCGTCGCAAG----GGATCTATCGCAGTCTATCTTGAGCCATGGCA 112024 || | || | |||| | ||| || | |||| | || || ||||| ||||| Sbjct 900990 GTTGATCAGGG-GGGCAACAAAAGACCCGGCGCCTTCGCCATGTACCTGGAGCCCTGGCA 900932 Query 112025 CGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTG 112084 | ||| | | || ||||| ||| || ||| || | |||||| ||| Sbjct 900931 CTTCGATGTGTTTGACTTCCTGGAGCTGAAGAAGAACACGGGAAAGGAGGAGCAGCGAGC 900872 Query 112085 CCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAG 112144 | | || || |||| ||| || ||||| || || |||||||||||| | || ||| | | Sbjct 900871 CAGGGACCTGTTCTACGCCCTGTGGATCCCTGACCTCTTCATGAAGCGGGTGGAGAACAA 900812 Query 112145 TGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGA-TGCCGTGGGTG 112203 | | ||||| || | ||||| | | | ||||| || || ||| | ||| | Sbjct 900811 CGAAGACTGGTCCCTGATGTGTCCGGCCGACTGCCCCGGGCTGGATGAGTGCTG-GGGGG 900753 Query 112204 AGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCG-ACGGTG 112262 |||||||||||| |||||||| | || ||| | || | ||| || ||| |||| Sbjct 900752 AGGAGTTTGAAGAACTCTACACCAGATATGAGAAGGAGGGGAGGGTGA-AGCGTGTGGTG 900694 Query 112263 CCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATAT 112322 ||| | | ||| | || || || |||| || || || || || || || || Sbjct 900693 AAGGCTCAGCAGCTATGGTATGCAATCATCGAGTCGCAGACAGAAACCGGGACGCCGTAC 900634 Query 112323 ATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAG 112382 ||| | |||||||| ||||| ||| ||||| || || ||||| |||| |||||| Sbjct 900633 ATGGTCTACAAAGATGCCTGCAACAGGAAGAGCAACCAGCAGAATCTGGGCACCATCAAG 900574 Query 112383 AGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGT 112442 | ||||||||| || |||||| | || | || ||| || ||| ||| || || Sbjct 900573 TGCAGCAACCTCTGCACGGAAATCGTCGAGTACACTAGCAAGGACGAGGTGGCGGTTTGC 900514 Query 112443 AACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTAT 112502 || || || || |||||||| || ||| || || ||| ||| | ||| | | Sbjct 900513 AATCTGGCCTCTGTCGCTCTCAACATGTACGTCACCCCTGAG---CGGACTTATGACTTT 900457 Query 112503 GAAAAACTCCACGAAGTTACGAA---AACTGTCACAAAAAACCTAAACAGAGTTATTGAT 112559 ||||| | || || || || |||| | ||| | |||| ||||| || Sbjct 900456 AAAAAATTGGCATCCGTGACCAAAGTAATTGTC---AGGAACTTGAACAAGGTTATCGAC 900400 Query 112560 AGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGT 112619 | || | ||||| || || || | | || || ||| | ||| | || || || Sbjct 900399 ATCAACTACTACCCGGTGGAAGAAGCCAGGAGGTCGAACATGCGCCACAGGCCGATAGGA 900340 Query 112620 CTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGAC 112679 |||| ||||| || | || |||| ||||| ||| || | | ||||| | | Sbjct 900339 ATCGGGGTCCAGGGATTGGCTGATGCCTTCATCCTTATGCGTTATCCCTTTGAAAGCCCC 900280 Query 112680 GAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAGGCG 112739 || || | |||| | || |||||||| |||||| | |||||| | || ||| Sbjct 900279 GAGGCTCAACTGCTCAACATCCAGATCTTTGAGACTATGTATTATGCCGCTTTGGAAGCG 900220 Query 112740 AGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCA 112799 || | ||| |||| | | ||| | || || || | || || || || | | Sbjct 900219 AGCTGCGAGCTGGCCGCCGAGCTTGGCACCTACGAGACGTACGAAGGCTCGCC-GGTGAG 900161 Query 112800 CAAGGG-GTGCTTCAATTTGATATGTGGGAAGGTGAGACCAA-GCTTCACTACGACTGGG 112857 ||||| | || || | || ||||||| || || |||| | | | |||| || Sbjct 900160 TAAGGGCATTCTCCAGTACGACATGTGGG-AGAAGACGCCAACGGACCTGTGGGACT-GG 900103 Query 112858 ACGCT-CTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCA 112916 | ||| || ||||| ||| | | || | | ||||| || || || | ||| Sbjct 900102 AAGCTGCTGAAGGAGAAGATCGCCAAACATGGCGTGAGGAACAGCCTGCTGCTGTCCCCA 900043 Query 112917 ATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACG 112976 ||||| || ||||||||||| || ||| |||| || || || | | | || ||||||| Sbjct 900042 ATGCCCACGGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTCCATCGAGGCCTACACA 899983 Query 112977 ACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATCTC 113036 | |||||||| | | ||| |||| |||||| ||| |||||| || || Sbjct 899982 AGCAACATCTACACCCGCCGGGTGCTCTCGGGGGAGTTTCAGATCGTCAACCCCCACCTG 899923 Query 113037 GTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAG 113081 | | ||||| | ||||| || || ||| |||| |||||| Sbjct 899922 CTCAAAGACCTGACAGAGAGGGGCCTGTGGAATGAGGAGATGAAG 899878 >seq2861 Length=8583 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 102192 GCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTC 102251 || ||||| ||| ||||| ||||||||||| ||||| ||| ||| || | ||||| Sbjct 6188 GCCTTTGCCGCTGTGGAGGGGATCTTCTTCTCGGGTTCGTTCGCCGCCATCTTCTGGCTG 6247 Query 102252 AAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAG 102311 |||||| |||| || ||||| || || ||||||||||||||| ||| | |||||| Sbjct 6248 AAGAAGAGAGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTCATCAGCAGAGACGAG 6307 Query 102312 G 102312 | Sbjct 6308 G 6308 >seq230 Length=973959 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 102192 GCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTC 102251 || ||||| ||| ||||| ||||||||||| ||||| ||| ||| || | ||||| Sbjct 832758 GCCTTTGCCGCTGTGGAGGGGATCTTCTTCTCGGGTTCGTTCGCCGCCATCTTCTGGCTG 832699 Query 102252 AAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAG 102311 |||||| |||| || ||||| || || ||||||||||||||| ||| | |||||| Sbjct 832698 AAGAAGAGAGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTCATCAGCAGAGACGAG 832639 Query 102312 G 102312 | Sbjct 832638 G 832638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620680318000720