Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haplochromis_20burtoni_20[refseq_20GCF_5F000239415.1_202011-12-22] 8,001 sequences; 831,411,547 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq113 197 2e-45 seq47 82.4 9e-11 seq19 82.4 9e-11 >seq113 Length=1687717 Score = 197 bits (218), Expect = 2e-45 Identities = 568/855 (66%), Gaps = 19/855 (2%) Strand=Plus/Plus Query 106460 AGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATT 106519 || |||| || |||| ||||||||| ||| ||| ||||| |||||||| | ||| Sbjct 900494 AGAGCGACAGAGGCCAGATTGCAAACCGCCACCTCGTCCTTGCTAGTGTACTCGACGATT 900553 Query 106520 TCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTG 106579 || || || | |||| | ||| || || |||| ||||| ||||| ||||| ||||| Sbjct 900554 TCCGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTG 900613 Query 106580 CACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCC 106639 || ||||| ||||||| |||||| |||||||| || || ||||| |||| || ||||| Sbjct 900614 CAGGCATCTTTGTAGACCATGTACGGCGTCCCGGTTTCTGTCTGCGACTCGATGATTGCA 900673 Query 106640 TTCCACACAT-CGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGT 106698 | ||| | | | | | || || || || ||| |||||| ||| || | || Sbjct 900674 TACCATAGCTGCTGAGCCTTCACCACACGC-TTCACCCTCCCCTCCTTCTCATATCTGGT 900732 Query 106699 GTAGAGGGCTTCAAACTCCTCACCCACCGCG-TCGGAGAGACCTGGTGCCTTGTCTGGAC 106757 |||||| ||||||||||||| ||| | || || || || || | | | |||| Sbjct 900733 GTAGAGTTCTTCAAACTCCTCCCCC-CAGCACTCATCCAGCCCGGGGCAGTCGGCCGGAC 900791 Query 106758 AGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACA 106817 | | || ||||| | | | ||| |||||||||||||| ||||| || ||||||| Sbjct 900792 ACATCAGGGACCAGTCTTCGTTGTTCTCCACCCGCTTCATGAAGAGGTCAGGGATCCACA 900851 Query 106818 GGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGT-AACTCA 106876 ||| | || || || || || ||| || | || ||| || | | ||| Sbjct 900852 GGGCGTAGAACAGGTCCCTGGCTCGCTGCTCCTCCTTTCCCGTGTT-CTTCTTCAGCTCC 900910 Query 106877 AGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC----CTT 106932 ||||| || | | ||| |||||| ||||| || || | |||| | || ||| Sbjct 900911 AGGAAGTCAAACACATCGAAGTGCCAGGGCTCCAGGTACATGGCGAAGGCGCCGGGTCTT 900970 Query 106933 TCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAAT 106992 | | |||| | |||| ||||| ||||||||| ||| | || | | |||||| | Sbjct 900971 TTGTTGCCC-CCCTGATCAACATAACGCGCTGTGTTGTTGTAAACCCTCAACATTGGGAC 901029 Query 106993 AATACCATCTGATTGACCATTTGTCCCCCGAATACGAGAT-TTATTGGCTCTCA--CATC 107049 | || | || ||||| || || || || | ||| ||| | || | Sbjct 901030 GAGCCCGTTGGAACAGCCATTGGTGCCGGCGAT-GTAGCTCCCCGTGGATCTAATGCAGC 901088 Query 107050 ATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGT 107109 || || || ||||| || ||||| | || ||||| | || || | | | || || Sbjct 901089 -TGACTG-CCACGCCAATCCCTCCAGCTGATTTGGAGATGAGGGCGCAATGCTTCAGCGT 901146 Query 107110 TCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTG 107169 | ||||| || | ||| ||| ||||| |||||| |||||||| ||||||| ||| Sbjct 901147 GTCGTAGATCCCCTCGATGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTG 901206 Query 107170 CGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGG 107228 ||| || || ||||||||||||||||| || | ||||| ||||| || | | | Sbjct 901207 CGGCCTGTTGGTTCCAGCATTGAAGAGGGTCGGGGAGGCGTGGGTGAAC-CACTTCTCTG 901265 Query 107229 ACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCA 107288 ||| | || ||| ||||| | ||| | || || || ||||||||| || | |||| Sbjct 901266 ACAGCAGGTTGTAGGTCTCGATGACTGCTTCGATATCCGTCCCGTGGATTCCCACAGCCA 901325 Query 107289 CACGCATAAACATGT 107303 | | ||| | ||||| Sbjct 901326 CCCTCATGAGCATGT 901340 >seq47 Length=2629205 Score = 82.4 bits (90), Expect = 9e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 106492 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCC 106551 |||||| || |||||||||| || ||||| |||| ||| || || || || Sbjct 775275 CTCATCTTTGCTCGTGTACTCTACGATCTCTGTGCACAGATTGCTGGATTTGATGGTGCC 775334 Query 106552 CAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 106611 || || | || ||||||||| ||||||| ||||||||||| | |||||| || || || Sbjct 775335 CAGGTTTTGCTGATTACTCTTTCTGTTGCAGGCATCCTTGTAAACCATGTATGGTGTACC 775394 Query 106612 CGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA 106646 || || ||||| |||| | || || | ||||| Sbjct 775395 AGTTTCTGTCTGCGACTCAATGATGGCGTACCACA 775429 >seq19 Length=3626725 Score = 82.4 bits (90), Expect = 9e-11 Identities = 100/134 (75%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 117293 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTCT 117352 |||| || | | ||| || || || ||| ||| ||||| ||||| | |||| ||||| Sbjct 2022406 CCTCGTCCCTGCTAATGAGCTCGTTGGAGTAGCTAAGGCCAGGCATTAACCCCCTCTTCT 2022347 Query 117353 TCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 117411 ||| ||| || ||||| ||| ||||| || ||||||||||| || |||||| ||||| Sbjct 2022346 TCAGCCAGTAGATAGCAGCA-AATGAACCAGAGAAGAAGATGCCTTCCACAGCTGCAAAA 2022288 Query 117412 GCAAAAAGGCGCTC 117425 || | || ||||| Sbjct 2022287 GCCACAATCCGCTC 2022274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589921794545240