Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haplochromis_20burtoni_20[refseq_20GCF_5F000239415.1_202011-12-22] 8,001 sequences; 831,411,547 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq113 114 1e-20 seq19 82.4 9e-11 >seq113 Length=1687717 Score = 114 bits (126), Expect = 1e-20 Identities = 599/950 (63%), Gaps = 8/950 (1%) Strand=Plus/Plus Query 47874 TTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCAT--TTGGATTAGTATATTGTA 47931 || || || | ||| || ||||| || || || ||||| | ||| |||| || | | Sbjct 900491 TTGAGAGCGACAGAGGCCAGATTGCAAACCGCCACCTCGTCCTTGC--TAGTGTACTCGA 900548 Query 47932 TTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNT 47991 ||||| | || || || | || ||||| || |||| ||| || || || | Sbjct 900549 CGATTTCCGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCC 900608 Query 47992 TGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGA 48051 |||| || || || ||||| | ||| | || || || |||||| |||| || || |||| Sbjct 900609 TGTTGCAGGCATCTTTGTAGACCATGTACGGCGTCCCGGTTTCTGTCTGCGACTCGATGA 900668 Query 48052 TAGATTTCCAAACAGTCCTAGCCTTTATAACA-GCTCTAGCTTTATTATCATGTTCGTAT 48110 | | | ||| | | |||||| | ||| ||| | | | || | || ||| Sbjct 900669 TTGCATACCATAGCTGCTGAGCCTTCACCACACGCTTCACCCTCCCC-TCCTTCTCATAT 900727 Query 48111 TTAGTATATAACTTCTCAAATTCATCCCCATA-CACATTATCTAACCCAGGACATTCATT 48169 | || || | | ||||| || ||||| | ||| | ||| | ||| || || || Sbjct 900728 CTGGTGTAGAGTTCTTCAAACTCCTCCCCCCAGCAC-TCATCCAGCCCGGGGCAGTCGGC 900786 Query 48170 AGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTAT 48229 |||||||||| ||||| || || | || | || | |||| || | || || || Sbjct 900787 CGGACACATCAGGGACCAGTCTTCGTTGTTCTCCACCCGCTTCATGAAGAGGTCAGGGAT 900846 Query 48230 CCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAG 48289 ||| || || || | ||||| | || | || || || || | ||| | || || Sbjct 900847 CCACAGGGCGTAGAACAGGTCCCTGGCTCGCTGCTCCTCCTTTCCCGTGTTCTTCTTCAG 900906 Query 48290 TTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGG 48349 || || ||||| | | ||| ||||| || || | || || || | | || || Sbjct 900907 CTCCAGGAAGTCAAACACATCGAAGTGCCAGGGCTCCAGGTACATGGCGAAGGCGCCGGG 900966 Query 48350 TCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGG 48409 || ||| || || || ||||| | ||| | || || ||||| ||||| || |||||||| Sbjct 900967 TCTTTTGTTGCCCCCCTGATCAACATAACGCGCTGTGTTGTTGTAAACCCTCAACATTGG 901026 Query 48410 GACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATT 48469 ||| | || || || |||||||| || | || || || || | | ||| || Sbjct 901027 GACGAGCCCGTTGGAACAGCCATTGGTGCCGGCGATGTAGCTCCCCGTGGATCTAATGCA 901086 Query 48470 ACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGT 48529 || | || | || || || || || ||| || || || || || | || || || Sbjct 901087 GCTGACTGCCACGCCAATCCCTCCAGCTGATTTGGAGATGAGGGCGCAATGCTTCAGCGT 901146 Query 48530 ATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTG 48589 || || || || || || || ||||| |||| | || || || || |||| || Sbjct 901147 GTCGTAGATCCCCTCGATGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTG 901206 Query 48590 CGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGA 48649 ||| ||||| | ||| || | || || || || || | ||||| |||||||| Sbjct 901207 CGGCCTGTTGGTTCCAGCATTGAAGAGGGTCGGGGAGGCGTGGGTGAACCACTTCTCTGA 901266 Query 48650 TAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATAC 48709 | || || || || || || || | || |||||| || || || | || || Sbjct 901267 CAGCAGGTTGTAGGTCTCGATGACTGCTTCGATATCCGTCCCGTGGATTCCCACAGCCAC 901326 Query 48710 ACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGA 48769 | ||| | ||| | || || | ||| | | |||| ||| || || | || || || Sbjct 901327 CCTCATGAGCATGTGCTGCGGACGCTCAGCTACTTTGCCATTGATCTTTAGCAGGTAGGA 901386 Query 48770 TTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCAT 48819 |||| || || || ||||| ||||||| || || || | |||| Sbjct 901387 GCGCTCCAGAGTCTTGAAGCCAAAGAAGTTGTAGGAGAAATCTCTGTCAT 901436 >seq19 Length=3626725 Score = 82.4 bits (90), Expect = 9e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 18657 CATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTC 18716 ||| ||||| | | ||||||| || || || | ||| |||||||| || ||||| ||||| Sbjct 2024279 CATGACTCCGAATCTTTGATACTCCGCCACCCGTTTCTCAAAGAAGTTGGTTTTCCCCTC 2024220 Query 18717 TAATGATATACATTCCATAAAATCAAATGGATTTT 18751 | ||| ||| | ||||| || ||||||||||||| Sbjct 2024219 GAGTGAGATAGACTCCATGAAGTCAAATGGATTTT 2024185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562052582093640