Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haplochromis_20burtoni_20[refseq_20GCF_5F000239415.1_202011-12-22] 8,001 sequences; 831,411,547 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq8 172 4e-37 seq1268 111 1e-18 seq692 91.5 1e-12 >seq8 Length=5219019 Score = 172 bits (190), Expect = 4e-37 Identities = 445/673 (66%), Gaps = 4/673 (1%) Strand=Plus/Minus Query 551913 ACTGCTTGCGAAAGAGCCAA-ACGAGCTCTTTCATCTGGTACTCAAACCACTATTGAAGT 551971 || ||||| || || || || | || || | || || | ||||| | | ||||| | Sbjct 3766805 ACAGCTTGTGAGAGGGCAAAGAGGACCT-TATCCTCCAGCACTCAGGCAAGCATTGAGAT 3766747 Query 551972 AGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTTGAAGA 552031 || || | |||||||||||||||| | | || | || | ||||| ||||| || Sbjct 3766746 CGACTCTCTCTTTGAGGGAATTGATTTTTACACCTCCATCACAAGGGCACGTTTTGAGGA 3766687 Query 552032 TATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGAGATTC 552091 | || ||||| || || |||| ||| ||||| || ||| | ||| | Sbjct 3766686 GCTCAACTCAGATCTTTTCAGGGGAACACTTGGCCCAGTTGAGAAAGCCCTGCAGGATGC 3766627 Query 552092 AAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCC 552151 ||| | |||||||||| | ||||||||||| || || ||||| || ||||||||||| Sbjct 3766626 CAAGCTGGATAAATCCAGGATTCATGAAATTGTCCTGGTCGGTGGCTCCACAAGAATTCC 3766567 Query 552152 TAAAATTCGCGAAATGTTA-AGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTGTTA 552210 ||||| | | | ||| || ||| ||| ||||| ||| | | || | || ||| Sbjct 3766566 CAAAATCCAGAAGCTCTTACAGGACTTCTTT-AATGGCAAAGACCTGAACAAGAGCATTA 3766508 Query 552211 ATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAA 552270 | |||||||| ||||| ||||| ||||| ||| | |||||||| || || || | | Sbjct 3766507 ACCCAGATGAAGCTGTAGCCTACGGTGCAGCAGTCCAAGCAGCCATCCTCATGGGCGACA 3766448 Query 552271 CTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAG 552330 | || || | ||| || | | || | ||||| |||| || ||||| || | | Sbjct 3766447 CCTCAGAGAATGTCCAAGATCTGCTGCTGCTGGATGTCGCTCCCCTGTCTCTGGGCATTG 3766388 Query 552331 AAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAA 552390 |||| | || ||| ||||||| ||| || | |||| || || || || || Sbjct 3766387 AAACCGCAGGCGGTGTTATGACACCTCTGATAAAGCGAAACACCACAATCCCCACAAAGC 3766328 Query 552391 AATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTG 552450 | ||| | || || || || |||||||| || | | ||| ||||| | |||| Sbjct 3766327 AGACTCAGATCTTCTCCACATACTCAGATAACCAGCCAGGTGTATTGATTCAGGTATTTG 3766268 Query 552451 AAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTA 552510 |||| || ||| | || ||| | || || | || || | ||| | | ||||| Sbjct 3766267 AAGGCGAGAGAGCCATGACCAAATACAACAACCTTCTGGGCAAATTTGACCTCACAGGTA 3766208 Query 552511 TTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATG 552570 | ||||| ||||| || || || || || || || || || || ||||| |||||||| | Sbjct 3766207 TCCCTCCAGCTCCCCGAGGTGTTCCACAGATAGAGGTAACATTTGATATTGATGCCAACG 3766148 Query 552571 GAATTTTGAATGT 552583 | ||| | ||||| Sbjct 3766147 GCATTCTAAATGT 3766135 >seq1268 Length=63628 Score = 111 bits (122), Expect = 1e-18 Identities = 108/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 ||||||| || || || ||||| || || || || || || |||||||| || ||||||| Sbjct 42433 ATGCAGTCATCACAGTTCCAGCTTACTTCAACGATTCCCAGCGTCAAGCCACCAAAGATG 42374 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 |||| || |||| |||||||| || || || |||||||| ||||||||||| || Sbjct 42373 CTGGGGCCATCTCTGGCCTTAATGTACTGCGCATCATCAATGAGCCTACTGCTGCAGCTA 42314 Query 550518 TTGCATATGGACTTGATAA 550536 |||| |||||||| || || Sbjct 42313 TTGCTTATGGACTGGACAA 42295 >seq692 Length=238295 Score = 91.5 bits (100), Expect = 1e-12 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 549977 ATGTCAAACAAAGTAGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTT 550036 |||||||| | ||| | ||||| ||| | || ||||| || ||||||||||| Sbjct 134346 ATGTCAAAGGGACCAGCAGTTGGTATTGATCTTGGGACCACCTACTCCTGTGTTGGTGTG 134405 Query 550037 TGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCT 550096 | || |||| ||||||||||||||||||||||| || || ||||| || || || | Sbjct 134406 TTCCAGCATGGCAAAGTTGAAATTATTGCCAATGACCAGGGCAACAGGACCACACCCAGT 134465 Query 550097 TATGTTTCTTTCACGGAAACTGA 550119 ||||| ||||||| || || || Sbjct 134466 TATGTGGCTTTCACAGATACCGA 134488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028872871035490