Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haplochromis_20burtoni_20[refseq_20GCF_5F000239415.1_202011-12-22] 8,001 sequences; 831,411,547 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq50 145 6e-30 >seq50 Length=2598561 Score = 145 bits (160), Expect = 6e-30 Identities = 138/175 (79%), Gaps = 1/175 (1%) Strand=Plus/Minus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 |||||| ||||||||||| || || |||||||||||||| || ||||| ||||| ||||| Sbjct 117420 CATGTCTGTGTACTCTGCACCAAAGTGCCTCCACTGGAAACCATACACAGGTCCTAGGTC 117361 Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269 |||||||| |||| ||| || ||||||| |||||| | || |||||||| || Sbjct 117360 ACCCTCTTCTCTGTCAGTGAACCCAAGGTTGTCCAGAAAGTCCCGAGACCCGTTGGCATC 117301 Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGA-CCCTCTGAC 30323 |||||| || || || || || || ||||| ||||| ||||| || |||| |||| Sbjct 117300 CCAGATTTTCACTCCTTTTTCTGACAGCTCCTTGGAATTTGTTGATCCCTGTGAC 117246 Score = 123 bits (136), Expect = 2e-23 Identities = 124/161 (77%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || || || | ||| || |||||||| || || || || |||||||||||||| || || Sbjct 118233 AGTCCTGTAATGTGTGCAATCATGTAGGTAAGAAGTGAATAGCTGGCGATGTTGAAAGGC 118174 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 ||||| | ||||| || | || | |||||| ||||||||||| ||||| ||||||| | Sbjct 118173 ACCCCTAATCCCATATCAGCTGAGCGCTGGTACAGCTGACACGACAGCTCGCCGTCGCAC 118114 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCAT 30029 ||||| ||||| || | | |||||| || || || ||||| Sbjct 118113 ACGTAGAACTGGCAGAGTGCGTGGCAGGGGGGCAGCGCCAT 118073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408577754803973