Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haplochromis_20burtoni_20[refseq_20GCF_5F000239415.1_202011-12-22] 8,001 sequences; 831,411,547 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq113 246 6e-60 seq2861 132 9e-26 seq230 132 9e-26 seq19 114 2e-20 >seq113 Length=1687717 Score = 246 bits (272), Expect = 6e-60 Identities = 1038/1624 (64%), Gaps = 59/1624 (4%) Strand=Plus/Plus Query 221036 GAGCCCTTGTTGACCAAAAGCTCGGTACGCATCTCGTCCGTCCATAGACCCCTCTCTTCC 221095 ||||| ||||| | | |||| | | |||||| || |||| || ||||||||| | Sbjct 899852 GAGCCATTGTTAGCGATCAGCTGGTTCTTCATCTCCTCATTCCACAGGCCCCTCTCTGTC 899911 Query 221096 AGCACCTTGACCATGTGCTTGTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGG 221155 || | |||| || ||| ||| || | || || || ||||||||||||| | | Sbjct 899912 AGGTCTTTGAGCAGGTGGGGGTTGACGATCTGAAACTCCCCCGAGAGCACCCGGCGGGTG 899971 Query 221156 TACAGGTTAGAAGTGAACGGTTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTG 221215 || | ||| ||| | | |||||| ||||||||||||||||||||| || ||| | Sbjct 899972 TAGATGTTGCTTGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAG 900031 Query 221216 GCGGTGGGCATGGGTGCCACCAGCAGACTGTTGCGCAGTCCGAATCTATTGATGGACTT- 221274 || |||||||| || | || |||||| ||||| | || || || | ||| | ||| Sbjct 900032 GCCGTGGGCATTGGGGACAGCAGCAGGCTGTTCCTCACGCC--ATGT-TTGGCGATCTTC 900088 Query 221275 TC--TCAGCGTGTTCCAGTCACAGTGTCCTCCCAGGTCNNNNNNNNNNNNNNNNNNNNNN 221332 || ||||| |||||||| || |||||| Sbjct 900089 TCCTTCAGCAGCTTCCAGTCCCA---------CAGGTCCGTTGGCGTCTTCTCCCACATG 900139 Query 221333 NNNNNNNNNNNNNNNNNNTTAGACACCGGACTCCCATCGTACGACTCGTAGGGACCGTAC 221392 ||| |||||| || ||||||| |||||||| || | Sbjct 900140 TCGTACTGGAGAATGCCCTTACTCACCGGCGAGCCTTCGTACGTCTCGTAGGTGCCAAGC 900199 Query 221393 AGTTCGGCCTGGGCGCAAGACTGCGTC-AGGGCAGCGTGGTAGATGGTCTCAAAGATCAT 221451 ||||| | |||| | || || | || || | || || |||||||||||| Sbjct 900200 TCGGCGGCCAGCTCGCAGCTC-GCTTCCAAAGCGGCATAATACATAGTCTCAAAGATCTG 900258 Query 221452 CTTGTTGAGTCTCTTG-GCCTCGGGAGAAGTGAAGGGCATA-CGCAGCATCTGAAAGACG 221509 ||||||| | ||| |||||||| | | || || ||| |||| | ||| | Sbjct 900259 GATGTTGAG-CAGTTGAGCCTCGGG-GCTTTCAAAGGGATAACGCATAAGGATGAAGGCA 900316 Query 221510 TCGGCCAGTCCCTGTACTCCGATACCGATGGGCCTGTGTCTCCTGTTGGAAGCGGCC--G 221567 || |||| |||||| || ||||| || || |||||||| | | |||| || | || | Sbjct 900317 TCAGCCAATCCCTGGACCCCGATTCCTATCGGCCTGTGGCGCATGTTCGA--CCTCCTGG 900374 Query 221568 CTTCTGGCACGGGATAAAAGTTGACGTCGATCAGATTGTTGAGGTTCAGAGTGATGACTT 221627 ||||| ||| || || |||||| |||||| | ||||| | |||| |||| Sbjct 900375 CTTCTTCCACCGGGTAGTAGTTGATGTCGATAACCTTGTTCAAGTTCC------TGAC-- 900426 Query 221628 TAACCACCTCGGTCA--GCTTCTGGTGATTGAACACCAACTCGCCGCCGTCGTGGAGGGG 221685 || || | ||||| | | | | || || || |||| || ||||| Sbjct 900427 -AATTACTTTGGTCACGGATGCCAATTTTTTAAAGTCATAAGTCCGC--TC----AGGGG 900479 Query 221686 TTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTT 221745 | | | | | || || || || |||||| || || || ||||||||||||||| | Sbjct 900480 TGACGTACATG--TTGAGAGCGACAGAGGCCAGATTGCAAACCGCCACCTCGTCCTTGCT 900537 Query 221746 GGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTG 221805 || |||| | ||| || || ||||||||||||||||||||||| ||||| | | || Sbjct 900538 AGTGTACTCGACGATTTCCGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGATTCTGCTG 900597 Query 221806 ATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTG 221865 || ||| | ||| || || ||||||| ||| | || || || || ||| Sbjct 900598 GTTGCTCTTCCTGTTGCAGGCATCTTTGTAGACCATGTACGGCGTCCCGGTTTCTGTCTG 900657 Query 221866 AGCCACCAGAATCTTGTCCCAGAGTTCTCTG-GCGCTCACCGTCCTCTTGACTGCACCCT 221924 | | | | || | ||| || | ||| || ||||| | ||| || |||| Sbjct 900658 CGACTCGATGATTGCATACCATAGCTG-CTGAGCCTTCACCACACGCTTCACCCTCCCCT 900716 Query 221925 CGGTCTTTTCATACCCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGC 221984 | ||| ||||| | ||| ||||| ||||||| || || | ||| ||||| | Sbjct 900717 C---CTTCTCATATCTGGTGTAGAGTTCTTCAAACTCCTCCCCCCAGCACTCATCCAGCC 900773 Query 221985 CTGGACACCTGGCGGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGA 222044 | || || ||| ||||||||||| ||||| | ||||| | |||| || ||||| Sbjct 900774 CGGGGCAGTCGGCCGGACACATCAGGGACCAGTCTTCGTTGTTCTCCACCCGCTTCATGA 900833 Query 222045 AGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGT 222104 ||||||| ||||||||||| || | || || || |||| |||||||||||| || Sbjct 900834 AGAGGTCAGGGATCCACAGGGCGTAGAACAGGTCCCTGGCTCGCTGCTCCTCCTTTCCCG 900893 Query 222105 TGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGG 222164 |||| ||| |||| |||| || ||||| | || |||||| |||||||| || | || Sbjct 900894 TGTTCTTCTTCAGCTCCAGGAAGTCAAACACATCGAAGTGCCAGGGCTCCAGGTACATGG 900953 Query 222165 CCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGA 222224 | | |||||||||| |||||||| |||||||| || | | | |||| | | Sbjct 900954 CGAAGGCGCCGGGTCTTTTGTTGCCCCCCTGATCAACATAACGCGCTGTGTTGTTGTAAA 901013 Query 222225 TGCGAAGGGTCGGTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTA-CGCACCG 222283 | | | || || || |||||||| | || |||||||| ||||| | | ||| Sbjct 901014 CCCTCAACATTGGGACGAGCCCGTTGGAACAGCCATTGGTGCCGGCGATGTAGCTCCCCG 901073 Query 222284 CCGGCCCTCAGGTTACTGGCAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCG 222343 || || | | ||| | | || ||| || || || || ||| ||||| | |||| Sbjct 901074 -TGGATCTAATGCAGCTGACTGCCACGCCAATCCCTCCAGCTGATTTGGAGATGAGGGCG 901132 Query 222344 CAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAA 222403 || ||| || ||||| ||| ||||| || ||| ||||| | | ||||| || Sbjct 901133 CAATGCTTCAGCGTGTCGTAGATCCCCTCGATGCTGTCATCCTTCATGGCGAGCAGGAAG 901192 Query 222404 CAAGACGACATCTGAGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTA 222463 || |||| ||| | || ||| | || || || || || || |||||| || Sbjct 901193 CAGCTGGACAGCTGCGGCCTGTTGGTTCCAGCATTGAAGAGGGTCGGGGAGGCGTGGGTG 901252 Query 222464 AAGTAGCCCCTAGACATCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGA 222523 || | | |||| ||| | ||| ||||| | |||| |||| | |||||| Sbjct 901253 AACCACTTCTCTGACAGCAGGTTGTAGGTCTCGATGACTGCTTCGATATCCGTCCCGTGG 901312 Query 222524 ATCTGCATGGCGCATCTCATGTACATGTACTGGGGCCTCT---CCACAGGACCCTTGGAG 222580 || || || |||||| ||||| ||| || | || | || || || || Sbjct 901313 ATTCCCACAGCCACCCTCATGAGCATGTGCTGCGGACGCTCAGCTACTTTGCCATT-GAT 901371 Query 222581 CTGGAGAGCAGGTACGATTTTTCCAGAGTCTTGAACCCAAAGTAGTTG-AGGTCAAAGTC 222639 || |||||||| || |||||||||||||| |||||| ||||| ||| ||| || Sbjct 901372 CT--TTAGCAGGTAGGAGCGCTCCAGAGTCTTGAAGCCAAAGAAGTTGTAGGAGAAA-TC 901428 Query 222640 TCTG 222643 |||| Sbjct 901429 TCTG 901432 >seq2861 Length=8583 Score = 132 bits (146), Expect = 9e-26 Identities = 111/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || ||||| |||| |||||||| ||||||||||| ||||| ||| |||||||| || Sbjct 6173 GGAGAGCGCGTGGTGGCCTTTGCCGCTGTGGAGGGGATCTTCTTCTCGGGTTCGTTCGCC 6232 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992 |||||||||||||| ||| ||| || |||||||| ||| ||| |||||||||||| Sbjct 6233 GCCATCTTCTGGCTGAAGAAGAGAGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTC 6292 Query 25993 ATCAGCAGGGACGAGG 26008 |||||||| ||||||| Sbjct 6293 ATCAGCAGAGACGAGG 6308 >seq230 Length=973959 Score = 132 bits (146), Expect = 9e-26 Identities = 111/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || ||||| |||| |||||||| ||||||||||| ||||| ||| |||||||| || Sbjct 832773 GGAGAGCGCGTGGTGGCCTTTGCCGCTGTGGAGGGGATCTTCTTCTCGGGTTCGTTCGCC 832714 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992 |||||||||||||| ||| ||| || |||||||| ||| ||| |||||||||||| Sbjct 832713 GCCATCTTCTGGCTGAAGAAGAGAGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTC 832654 Query 25993 ATCAGCAGGGACGAGG 26008 |||||||| ||||||| Sbjct 832653 ATCAGCAGAGACGAGG 832638 >seq19 Length=3626725 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || |||||| | || || ||||| |||||||| |||||||| ||| ||||| ||||| Sbjct 2022271 GGGGAGCGGATTGTGGCTTTTGCAGCTGTGGAAGGCATCTTCTTCTCTGGTTCATTTGCT 2022330 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992 || |||| |||||| ||| ||| |||| ||||| || || || |||||||||||| Sbjct 2022331 GCTATCTACTGGCTGAAGAAGAGGGGGTTAATGCCTGGCCTTAGCTACTCCAACGAGCTC 2022390 Query 25993 ATCAGCAGGGACGAGG 26008 || ||||||||||||| Sbjct 2022391 ATTAGCAGGGACGAGG 2022406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928751903909440