Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haplochromis_20burtoni_20[refseq_20GCF_5F000239415.1_202011-12-22] 8,001 sequences; 831,411,547 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq8 194 1e-43 seq1268 111 1e-18 seq235 95.1 8e-14 seq1147 93.3 3e-13 >seq8 Length=5219019 Score = 194 bits (214), Expect = 1e-43 Identities = 375/546 (69%), Gaps = 8/546 (1%) Strand=Plus/Minus Query 474332 ATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTA 474391 ||||| |||||| | || || || || |||||| | |||| || |||| ||||| Sbjct 3767579 ATTGGCATTGATCTGGGCACCACCTATTCTTGTGTTGGGGTTTTCCAGCATGGCAAAGTT 3767520 Query 474392 GAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAA 474451 || || |||||||| || || || |||||||| || ||| ||||| ||||||| || Sbjct 3767519 GAGATCATTGCCAACGATCAGGGCAATAGAACCACTCCAAGCTATGTGGCTTTTACCGAC 3767460 Query 474452 ACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACT 474511 || ||| ||||||||||||||||| || | |||| |||| || || ||| || Sbjct 3767459 ACAGAAAGGCTTATTGGAGATGCTGCCAAGAACCAAGTTGCAATGAACCCCAATAACACA 3767400 Query 474512 ATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACT-GTCCAATCTGA 474570 || |||||||| ||| | ||||||| | || ||| |||| ||| | || || || || Sbjct 3767399 ATCTTTGATGCCAAACGGCTGATTGGAAGAAAGTTTAATGA-CCCAGTCGTACAGTCCGA 3767341 Query 474571 TATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACC--ATATATAGAAGCA 474628 ||| | |||||||| |||||||| | | | ||| || || | | || | | Sbjct 3767340 CATGAAGCTCTGGCCTTTCAAGGTGATTGACGATAATGGAAAGCCCAAAGTCCAGGTGGA 3767281 Query 474629 ATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCC 474688 ||||| ||| || || || ||| | || || ||||||| || ||||| | | Sbjct 3767280 ATACA--AAGGGGAGACCAAGGCATTCTATCCTGAGGAAATTTCCTCCATGGTCCTGGTT 3767223 Query 474689 AAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTAC 474747 |||||||| | | || ||| | || || |||||| || | | ||||| || || Sbjct 3767222 AAAATGAAGGAGATAGCTGAG-GCCTACCTGGGACAAAGGGTGTCAAACGCAGTCATCAC 3767164 Query 474748 TGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGC 474807 || ||||| ||||| || || || || | ||||| || || ||||| || || | Sbjct 3767163 AGTGCCAGCTTATTTCAACGACTCCCAGAGACAAGCTACCAAGGATGCTGGGGTGATCTC 3767104 Query 474808 AGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCT 474867 || || |||||| | | || |||||||| || |||||||| || |||| ||||| || Sbjct 3767103 TGGACTAAATGTTCTGAGGATCATTAATGAGCCCACAGCAGCAGCCATTGCATATGGCCT 3767044 Query 474868 TGATAA 474873 ||||| Sbjct 3767043 GGATAA 3767038 Score = 158 bits (174), Expect = 8e-33 Identities = 420/627 (67%), Gaps = 16/627 (3%) Strand=Plus/Minus Query 475548 TTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAAT 475607 |||| | || ||||| ||||| |||||||||| | | || || |||||||| | Sbjct 3766753 TTGAGATCGACTCTCTCTTTGAGGGAATTGATTTTTACACCTCCATCACAAGGGCACGTT 3766694 Query 475608 TTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCT-C 475666 |||| || | || ||||| || || |||| ||| || ||||| ||| || | Sbjct 3766693 TTGAGGAGCTCAACTCAGATCTTTTCAGGGGAACACTTGGCCCAGTTGAGAAAGCCCTGC 3766634 Query 475667 AGAGATTCTAAACTTGACAAATCACAAG-TCCATGAAATTGTTCTTGTAGGAGGTTCAAC 475725 || ||| | || || || ||||| || | | ||||||||||| || || || || || || Sbjct 3766633 AG-GATGCCAAGCTGGATAAATC-CAGGATTCATGAAATTGTCCTGGTCGGTGGCTCCAC 3766576 Query 475726 AAGAATTCCAAAAATAAGAGAAATGCTTTCATCA-TATTTTAATGGTAAAAAGTTAAATG 475784 ||||||||| ||||| |||| ||| || | | |||||||| ||| | | || Sbjct 3766575 AAGAATTCCCAAAAT-CCAGAAGCTCTTACAGGACTTCTTTAATGGCAAAGACCTGAACA 3766517 Query 475785 AAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTAT-TTTA 475843 | || | || || ||||||||||| || || || || || ||||||||||| || | | Sbjct 3766516 AGAGCATTAACCCAGATGAAGCTGTAGCCTACGGTGCAGCAGTCCAAGCAGCCATCCTCA 3766457 Query 475844 TCAG-GTCA-ATCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACTTT 475901 | | | || ||| ||||| | | || | | || | || || |||| || | Sbjct 3766456 TGGGCGACACCTCA---GAGAATGTCCAAGATCTGCTGCTGCTGGATGTCGCTCCCCTGT 3766400 Query 475902 CATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTA 475961 | | || ||||||| | || || ||||||| ||| || | |||| || | | Sbjct 3766399 CTCTGGGCATTGAAACCGCAGGCGGTGTTATGACACCTCTGATAAAGCGAAACACCACAA 3766340 Query 475962 TCCCATGCAA--AAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAAC 476019 |||| || | | ||| | | || ||||| || || ||||| || || |||| Sbjct 3766339 TCCCCACAAAGCAGACTCAGA--TCTTCTCCACATACTCAGATAACCAGCCAGGTGTATT 3766282 Query 476020 CATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTT 476079 || || | |||||||| || ||| | || ||| | || ||| || || | || Sbjct 3766281 GATTCAGGTATTTGAAGGCGAGAGAGCCATGACCAAATACAACAACCTTCTGGGCAAATT 3766222 Query 476080 TAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGA 476139 | | || |||||| ||||| |||||| |||| ||||| || || || || || ||||| Sbjct 3766221 TGACCTCACAGGTATCCCTCCAGCTCCCCGAGGTGTTCCACAGATAGAGGTAACATTTGA 3766162 Query 476140 TATTGATGCAAATGGTATTCTTAATGT 476166 ||||||||| || || ||||| ||||| Sbjct 3766161 TATTGATGCCAACGGCATTCTAAATGT 3766135 >seq1268 Length=63628 Score = 111 bits (122), Expect = 1e-18 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 476032 TGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGG 476091 ||||||||| ||| | ||||| || ||||||| ||||| | ||| | || || Sbjct 41227 TGAAGGTGAGAGAGCCATGACTAAGGACAATAACATCCTTGGGAAGTTTGAACTGACTGG 41168 Query 476092 TATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAA 476151 |||||| |||||||| ||||| |||||||| || || || || ||||| ||||||||||| Sbjct 41167 TATTCCACCTGCTCCGAGAGGGGTTCCTCAGATCGAGGTGACCTTTGACATTGATGCAAA 41108 Query 476152 TGGTATTCTTAATGTTACTGC 476172 ||| ||||| ||||| |||| Sbjct 41107 TGGCATTCTCAATGTGTCTGC 41087 >seq235 Length=965616 Score = 95.1 bits (104), Expect = 8e-14 Identities = 117/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 ||| |||||||||| | || ||||| ||| ||||||| |||| || |||| ||| Sbjct 553451 GCAGTTGGTATTGACCTGGGCACTACCTACTCCTGTGTAGGAGTTTTTCAGCATGGCAAA 553392 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || ||||| |||||||||||||| || || || || ||||| |||||| | || ||| Sbjct 553391 GTGGAAATCATTGCCAATGACCAGGGAAACAGGACTACACCCAGCTATGTTGCATTCACT 553332 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAG 474488 || || || || ||||| ||||| || || | |||| Sbjct 553331 GACACAGAGAGGCTGATTGGGGATGCAGCCAAGAACCAAG 553292 >seq1147 Length=85532 Score = 93.3 bits (102), Expect = 3e-13 Identities = 116/156 (74%), Gaps = 5/156 (3%) Strand=Plus/Plus Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC- 474447 || || || ||| |||||||||| || || ||| || || || || || | || || Sbjct 10549 GTGGAGATTATTCCCAATGACCAGGGAAACCGAATCACCCCCTCCTACGTGGCCTTCACC 10608 Query 474448 --TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTG-CATCTAATCCTGT 474504 |||| ||| | ||| ||||| |||||||| || |||| |||| | ||||| |||| Sbjct 10609 AGTGAAGGTGAGCGTCTGATTGGTGATGCTGCCAAGAATCA-GCTGACCTCTAACCCTGA 10667 Query 474505 TAATACTATTTTTGATGCTAAAAGATTGATTGGTCG 474540 || |||||||||||||| ||||| |||||||||| Sbjct 10668 GAACACTATTTTTGATGCAAAAAGGCTGATTGGTCG 10703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267835998289148