Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haplochromis_20burtoni_20[refseq_20GCF_5F000239415.1_202011-12-22] 8,001 sequences; 831,411,547 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq113 208 9e-49 seq47 91.5 2e-13 seq19 82.4 9e-11 >seq113 Length=1687717 Score = 208 bits (230), Expect = 9e-49 Identities = 959/1494 (64%), Gaps = 48/1494 (3%) Strand=Plus/Minus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| ||||| ||||| |||| || | || ||||||||| || || || | ||| Sbjct 901347 CCGCAGCACATGCTCATGAGGGTGGCTGTGGGAATCCACGGGACGGATATCGAAGCAGTC 901288 Query 75272 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 75330 | ||||| ||| || | |||| | | || ||||| ||||| | || |||||||| Sbjct 901287 ATCGAGACCTACAACCTGCTGTCAGAGAAGTG-GTTCACCCACGCCTCCCCGACCCTCTT 901229 Query 75331 CAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 75390 ||||||||| || || |||||| ||||||| |||||||| |||||| ||||| || Sbjct 901228 CAATGCTGGAACCAACAGGCCGCAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAGGATGA 901169 Query 75391 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 75450 | ||| | || ||||| | || || | | | || || | ||||| || | ||||| Sbjct 901168 CAGCATCGAGGGGATCTACGACACGCTGAAGCATTGCGCCCTCATCTCCAAATCAGCTGG 901109 Query 75451 GGGTATTGGGATGCACATCCATGATG--TGAGAGCCAATAA-ATCTCGTATTCGGGGGAC 75507 || ||||| || || || | || | ||| ||| | || || || || Sbjct 901108 AGGGATTGGCGTGG-CAGTCA-GCTGCATTAGATCCACGGGGAGCTAC-ATCGCCGGCAC 901052 Query 75508 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 75567 ||||| || | || | | |||||| | | || | ||| ||||||||| || Sbjct 901051 CAATGGCTGTTCCAACGGGCTCGTCCCAATGTTGAGGGTTTACAACAACACAGCGCGTTA 900992 Query 75568 TGTAAATCAAGCGGGGCGTCGCAAG----GGGTCCATCGCGGTCTACTTGGAACCATGGC 75623 ||| |||| | ||||| | ||| || || |||| | ||| |||| || |||| Sbjct 900991 TGTTGATCAGG-GGGGCAACAAAAGACCCGGCGCCTTCGCCATGTACCTGGAGCCCTGGC 900933 Query 75624 ATGCCGATATCATGGAGTTCCTTGAGTT-ACGACTCAACCAAGGTGACGAAGAGGCTCGG 75682 | |||| | | || ||||| ||| | | || ||| || | || ||| || Sbjct 900932 ACTTCGATGTGTTTGACTTCCTGGAGCTGAAGAAG-AACACGGGAAAGGAGGAGCAGCGA 900874 Query 75683 TGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAG 75742 || || || || | |||||||||| || ||||| |||||||||||||| ||| | Sbjct 900873 GCCAGGGACCTGTTCTACGCCCTGTGGATCCCTGACCTCTTCATGAAGCGGGTGGAGAAC 900814 Query 75743 GGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGA-CGCGGTGGG 75801 | | ||||| || | ||||| | | | || || || || || | ||| Sbjct 900813 AACGAAGACTGGTCCCTGATGTGTCCGGCCGACTGCCCCGGGCTGGATGAGTGCTG-GGG 900755 Query 75802 TGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACTGT 75861 ||||||||||||| |||||||| | ||||| ||||||| || | || ||| || Sbjct 900754 GGAGGAGTTTGAAGAACTCTACACCAGATATGAGAAGGAGGGGAGGGTGAA-GCGTGTGG 900696 Query 75862 ACCAGCCGCCG-ATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCAT 75920 || | | | | | ||| | || || || | || ||||| || || || || || | Sbjct 900695 TGAAGGCTCAGCAGCTATGGTATGCAATCATCGAGTCGCAGACAGAAACCGGGACGCCGT 900636 Query 75921 ATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCA 75980 | ||| | ||||| ||||| || |||| |||||| ||||| ||||| |||| || |||| Sbjct 900635 ACATGGTCTACAAAGATGCCTGCAACAGGAAGAGCAACCAGCAGAATCTGGGCACCATCA 900576 Query 75981 AGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTT 76040 || || || || ||||||||||| | |||||||| ||||| ||| ||| |||| Sbjct 900575 AGTGCAGCAACCTCTGCACGGAAATCGTCGAGTACACTAGCAAGGACGAGGTGGCGGTTT 900516 Query 76041 GCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTGATT 76100 ||||| |||| || |||| || | ||| |||| ||| || |||| ||| | Sbjct 900515 GCAATCTGGCCTCTGTCGCTCTCAACATGTACGTCACCCCTGAG---CGGACTTATGACT 900459 Query 76101 ATGAAAAACT-TCAT--GAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTG 76157 | ||||| | ||| | | || | ||||| || || | ||| || || | Sbjct 900458 TTAAAAAATTGGCATCCGTGACCAAAGTAATTGT---CAGGAACTTGAACAAGGTTATCG 900402 Query 76158 ACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTATTG 76217 ||| || | || || || || || | | ||| || ||||| ||||| || || | Sbjct 900401 ACATCAACTACTACCCGGTGGAAGAAGCCAGGAGGTCGAACATGCGCCACAGGCCGATAG 900342 Query 76218 GTTTGGGTGTTCAAGGTCTCGCGGATGTATTTAT-TTTGTGCCGCTACGCATTTGATTCA 76276 | | || || || || | || |||| || || || || || || | ||||| Sbjct 900341 GAATCGGGGTCCAGGGATTGGCTGATGCCTTCATCCTTATG-CGTTATCCCTTTGA---- 900287 Query 76277 GATGAAGCCAAGGAGATGAA-TGCT-------CGTATCTTTGAAACCATGTATCACGCAT 76328 ||||| | | | || |||| | |||||||| || |||||| | || Sbjct 900286 ----AAGCCCCGAGGCTCAACTGCTCAACATCCAGATCTTTGAGACTATGTATTATGCCG 900231 Query 76329 CCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTT 76388 | |||| ||||| || || |||| | | | || |||| ||||| | || || | Sbjct 900230 CTTTGGAAGCGAGCTGCGAGCTGGCCGCCGAGCTTGGCACCTACGAGACGTACGAAGGCT 900171 Query 76389 CTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAA-GCTCAAC 76447 | || | | | || | || |||| || ||||||| || || |||| | | Sbjct 900170 CGCCGGTGAGTAAGGGCATTCTCCAGTACGACATGTGGG-AGAAGACGCCAACGGACCTG 900112 Query 76448 TACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTG 76507 | |||||| | | || ||||| ||| | | || | | ||||| || || Sbjct 900111 TGGGACTGGAAGCTGCTGAAGGAGAAGATCGCCAAACATGGCGTGAGGAACAGCCTGCTG 900052 Query 76508 ATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAA 76567 || | |||||||| || ||||||||||| || ||| |||| || || || | | | || Sbjct 900051 CTGTCCCCAATGCCCACGGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTCCATCGAG 899992 Query 76568 CCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAAC 76627 | ||||||| ||||||||| | | ||| | || |||||| || |||||| Sbjct 899991 GCCTACACAAGCAACATCTACACCCGCCGGGTGCTCTCGGGGGAGTTTCAGATCGTCAAC 899932 Query 76628 AAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAG 76681 ||||| |||| ||||| | ||| || || ||| |||| |||||| Sbjct 899931 CCCCACCTGCTCAAAGACCTGACAGAGAGGGGCCTGTGGAATGAGGAGATGAAG 899878 >seq47 Length=2629205 Score = 91.5 bits (100), Expect = 2e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 75896 TCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGT 75955 || ||||| || ||||| |||||||| ||| ||||||||||||| || |||| |||||| Sbjct 775409 TCGCAGACAGAAACTGGTACACCATACATGGTTTACAAGGATGCCTGCAACAGAAAGAGT 775350 Query 75956 AACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTAC 76015 || || | || |||| || ||||| | ||||| ||||| || || |||||||| Sbjct 775349 AATCAGCAAAACCTGGGCACCATCAAATCCAGCAATCTGTGCACAGAGATCGTAGAGTAC 775290 Query 76016 ACAGATAAGGATGAG 76030 || || |||||| Sbjct 775289 ACGAGCAAAGATGAG 775275 >seq19 Length=3626725 Score = 82.4 bits (90), Expect = 9e-11 Identities = 100/134 (75%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 65077 GAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGC-GC 65135 ||||| || | || ||||| |||||| || ||||||||||| || ||||| ||| || Sbjct 2022274 GAGCGGATTGTGGCTTTTGCAGCTGTGGAAGGCATCTTCTTCTCTGGTTCATT-TGCTGC 2022332 Query 65136 TATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTAT 65195 ||| || ||| |||||||| |||| | ||||| ||||| ||| ||| || || || || Sbjct 2022333 TATCTACTGGCTGAAGAAGAGGGGGTTAATGCCTGGCCTTAGCTACTCCAACGAGCTCAT 2022392 Query 65196 TTCCCGAGATGAGG 65209 | | | || |||| Sbjct 2022393 TAGCAGGGACGAGG 2022406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596509935582880