Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haplochromis_20burtoni_20[refseq_20GCF_5F000239415.1_202011-12-22] 8,001 sequences; 831,411,547 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1090 158 1e-32 seq40 131 2e-24 seq113 125 9e-23 seq2861 95.1 1e-13 seq447 95.1 1e-13 seq230 95.1 1e-13 seq54 86.0 8e-11 seq19 86.0 8e-11 >seq1090 Length=90682 Score = 158 bits (174), Expect = 1e-32 Identities = 156/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| | | || ||||||||| |||||||||||||| | | | || Sbjct 27631 GCTTGGCCAGCTCACCGGGGAGGAGCAGGCGCACTGCGGTCTGGATCTCCCTGGAGGTGA 27572 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||| ||||| |||| ||||| || ||||||| ||||||| |||| | Sbjct 27571 TGGTGGAGCGTTTGTTGTAGTGGGCCAGGCGAGATGCCTCGGCTGCGATGCGCTCGAAGA 27512 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||||||||||||||||| ||| | |||| |||||| || |||||||| Sbjct 27511 TGTCGTTGACAAACGAGTTCATGATGCTCATGGCCTTGGAGGAGATCCCGGTGTCGGGGT 27452 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| ||||||||||| Sbjct 27451 GGACCTGCTTCAGCACCTTGTA 27430 >seq40 Length=2877665 Score = 131 bits (144), Expect = 2e-24 Identities = 150/202 (74%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| | | | |||||| || |||||||||||||| | | | || Sbjct 2103613 GCTTGGCCAGCTCACCGGGGAGAAGCAGGCGAACTGCGGTCTGGATCTCCCTGGAGGTGA 2103672 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||| ||||| ||| ||| || | | |||| || |||| | Sbjct 2103673 TGGTGGAGCGCTTGTTGTAGTGGGCCAGGCGGGAGGCTTCAGCGGCGATACGCTCGAAGA 2103732 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| ||||| ||||| ||||||| ||| | ||| |||||||| |||||||| Sbjct 2103733 TGTCATTGACGAACGAATTCATGATGCTCATGGCCTTAGACGAGATGCCGGTGTCGGGGT 2103792 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| || |||||||| Sbjct 2103793 GGACCTGCTTCAGAACCTTGTA 2103814 >seq113 Length=1687717 Score = 125 bits (138), Expect = 9e-23 Identities = 275/421 (65%), Gaps = 0/421 (0%) Strand=Plus/Plus Query 1628162 ACTGGACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGG 1628221 ||| |||||| || ||||| |||||| || | | || ||||| |||||||||||| Sbjct 900543 ACTCGACGATTTCCGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGATTCTGCTGGTTGC 900602 Query 1628222 TGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCG 1628281 | || |||| ||| || |||| || |||||| |||| ||||| || |||||| | Sbjct 900603 TCTTCCTGTTGCAGGCATCTTTGTAGACCATGTACGGCGTCCCGGTTTCTGTCTGCGACT 900662 Query 1628282 CGACGATGGCCGACCAGATCTGGCGCGCGGGCACGACAGTCCGCGCGCGGCCCTNNNNNN 1628341 ||| ||| || |||| | ||| | || ||| ||| | | | | |||| Sbjct 900663 CGATGATTGCATACCATAGCTGCTGAGCCTTCACCACACGCTTCACCCTCCCCTCCTTCT 900722 Query 1628342 NNNNNNNNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCACTCGTGCAGGCCGGGCGCCT 1628401 ||||| || | || ||||||| | ||| ||||| | Sbjct 900723 CATATCTGGTGTAGAGTTCTTCAAACTCCTCCCCCCAGCACTCATCCAGCCCGGGGCAGT 900782 Query 1628402 CGGACGGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCGCGGCGCATAAAGAGGTCAC 1628461 ||| |||||| | || |||||||| | | || || | || ||| ||||||||| Sbjct 900783 CGGCCGGACACATCAGGGACCAGTCTTCGTTGTTCTCCACCCGCTTCATGAAGAGGTCAG 900842 Query 1628462 ACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTT 1628521 ||||||| ||||| || ||||| | || || | ||||||||| || |||||| | Sbjct 900843 GGATCCACAGGGCGTAGAACAGGTCCCTGGCTCGCTGCTCCTCCTTTCCCGTGTTCTTCT 900902 Query 1628522 TGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGC 1628581 | || || || |||| | | ||| |||||| ||||||||||| ||| ||||||| Sbjct 900903 TCAGCTCCAGGAAGTCAAACACATCGAAGTGCCAGGGCTCCAGGTACATGGCGAAGGCGC 900962 Query 1628582 C 1628582 | Sbjct 900963 C 900963 Score = 120 bits (132), Expect = 4e-21 Identities = 117/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 1627295 TCCACAGGCCGCGCGCCATCAGGCGCTTGACCAGGTGGCGGTTGACCACGGTAAAGTCGC 1627354 |||||||||| | | | ||||| |||| ||||||| ||||||| | ||| || | Sbjct 899892 TCCACAGGCCCCTCTCTGTCAGGTCTTTGAGCAGGTGGGGGTTGACGATCTGAAACTCCC 899951 Query 1627355 CCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTGATGACCTCGCACGCCTCGGTGTTGC 1627414 |||||||||| ||||| |||||||||||| | ||| | ||||| | |||| |||||| Sbjct 899952 CCGAGAGCACCCGGCGGGTGTAGATGTTGCTTGTGTAGGCCTCGATGGACTCGTTGTTGC 900011 Query 1627415 CCAGGATCTGCGACGTCGTGGCCGTGGGCAT 1627445 |||||||||| | || | |||||||||||| Sbjct 900012 CCAGGATCTGGGCGGTGGAGGCCGTGGGCAT 900042 >seq2861 Length=8583 Score = 95.1 bits (104), Expect = 1e-13 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 869183 TCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTG 869242 ||||| | ||||| | |||||| |||| ||||||||||| ||||| | |||||| Sbjct 6306 TCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCTTC 6247 Query 869243 AGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 ||||| ||||||||| ||| |||||||| ||||| ||||| || ||||||||| Sbjct 6246 AGCCAGAAGATGGCGGCGAACGAACCCGAGAAGAAGATCCCCTCCACAGCGGCAAAG 6190 >seq447 Length=483810 Score = 95.1 bits (104), Expect = 1e-13 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 512050 CGTCATCTCCTTTGACGGCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACAC 512109 |||||||||||| ||||| ||||||||||| |||||||||| || ||| | ||||| Sbjct 42865 CGTCATCTCCTTCGACGGTTCCTACGTCAACTACCGCCACTTGGCTCTGCTCTGTGACAC 42806 Query 512110 CATGTGCTGCCGCGGATCGGTGGTGGCCGTCACGCGCCACGGCTTCAACCGC 512161 |||| |||||| || || ||||| |||| || |||||| |||||||| Sbjct 42805 CATGACCTGCCGAGGTCACCTGATGGCCATCACCCGTCACGGCATCAACCGC 42754 >seq230 Length=973959 Score = 95.1 bits (104), Expect = 1e-13 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 869183 TCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTG 869242 ||||| | ||||| | |||||| |||| ||||||||||| ||||| | |||||| Sbjct 832640 TCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCTTC 832699 Query 869243 AGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 ||||| ||||||||| ||| |||||||| ||||| ||||| || ||||||||| Sbjct 832700 AGCCAGAAGATGGCGGCGAACGAACCCGAGAAGAAGATCCCCTCCACAGCGGCAAAG 832756 >seq54 Length=2439707 Score = 86.0 bits (94), Expect = 8e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 ||||||||||| | |||||||| ||| | ||| | |||||| | ||||||||| Sbjct 972634 GCCGCCAACTATTTGGACATCAAAGGCCTGTTAGATGTCACCTGCAAGACGGTGGCCAAC 972575 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAA 1592295 |||||||| ||||| | || ||||||||| | ||||| || |||||||| Sbjct 972574 ATGATCAAAGGCAAAACCCCAGAGGAGATCAGGAAGACTTTCAACATCAA 972525 >seq19 Length=3626725 Score = 86.0 bits (94), Expect = 8e-11 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 869829 CCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTACATCTCCCATACTTGCT 869888 |||||||||| ||||||||| ||||||| ||||| ||||||||||| ||| | | Sbjct 2020205 CCACCTCCTCCACGGTCCAGAAAGAGGCCTGGGCCTGTTTGTACATCTTCCAGATGTCTC 2020146 Query 869889 GGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTCGCGCAACAGGGGTTC 869943 |||| |||| || || | |||||| || ||||||| || || | ||| ||||| Sbjct 2020145 GGTACTGGATGGGAAAAATGACAAACCGCCTGGGGTTCTCTCGGAGCAGAGGTTC 2020091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106482600471317