Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haplochromis_20burtoni_20[refseq_20GCF_5F000239415.1_202011-12-22] 8,001 sequences; 831,411,547 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq113 154 1e-32 >seq113 Length=1687717 Score = 154 bits (170), Expect = 1e-32 Identities = 966/1532 (63%), Gaps = 61/1532 (4%) Strand=Plus/Plus Query 138501 GTTTATGACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGG 138560 ||| | || |||||| || || | | || || || ||| |||||| | ||| | | Sbjct 899932 GTTGACGATCTGAAACTCCCCCGAGAGCACCCGGCGGGTGTAGATGTTGCTTGTGTAGGC 899991 Query 138561 CTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCAC 138620 ||| | || |||||||| ||||| ||||| || |||| || || ||||| | || Sbjct 899992 CTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATTGGGGACAG 900051 Query 138621 CAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTCGTTCCTTGAGCGACGACCAGTCCCA 138680 || || |||| | || || ||| ||||| ||| | ||||||||| Sbjct 900052 CAGCAGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCA 900111 Query 138681 CAAATCGCTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACT 138740 || || | || | || | |||||| |||||||| | || ||| ||| | || Sbjct 900112 CAGGTCCGTTGGCGTCTTCTCCCACATGTCGTACTGGAGAATGCCCTTACTCACCGGCGA 900171 Query 138741 GCCTTCGTACGAATCGTATACACCAAACTCTTGCGCCAACTCGTTGCTCGCCTCGAGCGC 138800 ||||||||||| ||||| |||| ||| |||| |||| |||||| || | || Sbjct 900172 GCCTTCGTACGTCTCGTAGGTGCCAAGCTCGGCGGCCAGCTCGCAGCTCGCTTCCAAAGC 900231 Query 138801 ACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTA 138860 |||| || ||||| || ||||| ||||||| | | ||||||| ||| || | Sbjct 900232 GGCATAATACATAGTCTCAAAGATCTGGATGTTGAGCAGTTGAGCCTCGGGGCTTTCAAA 900291 Query 138861 CGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCG 138920 || || | | |||| || || |||| || || || || | ||| | || | Sbjct 900292 GGGATAACGCATAAGGATGAAGGCATCAGCCAATCCCTGGACCCCGATTCCTATCGGCCT 900351 Query 138921 ATGGCGCAGATTTGACGCTTTTGCGGCTTCGATAGGATAATAGTTTACATCGATGATTTT 138980 ||||||| || ||| | || |||| | || || ||||| | ||||| | || Sbjct 900352 GTGGCGCATGTTCGACCTCCTGGCTTCTTCCACCGGGTAGTAGTTGATGTCGATAACCTT 900411 Query 138981 GTTTAAATTTCGCACGACCACCTTAGTC--GTATGCTTTAATCGTTCAAAATCGTATGTG 139038 ||| || || | || | || || ||| | |||| ||| || ||| || || || Sbjct 900412 GTTCAAGTTCCTGACAATTACTTTGGTCACGGATGCC--AATTTTTTAAAGTCATAAGTC 900469 Query 139039 CCCCCGTTGTCGTCGACGACGTCGACAAATTTGTTGACACAAATCGAGGCTATGTTGCAC 139098 | | | | || ||||| ||| |||||| | | ||||| | ||||| Sbjct 900470 CGCTCAGGG--GT----GACGT--ACA----TGTTGAGAGCGACAGAGGCCAGATTGCAA 900517 Query 139099 ACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACTACACTTG 139158 |||||||| ||||| | |||| ||||| ||||| | || | || || |||||| Sbjct 900518 ACCGCCACCTCGTCCTTGCTAGTGTACTCGACGATTTCCGTGCAGAGGTTGCTGCACTTG 900577 Query 139159 ATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATAC 139218 || || || | ||| || || ||||| || | ||| || ||||||||||| | ||| ||| Sbjct 900578 ATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCATCTTTGTAGACCATGTAC 900637 Query 139219 GGTGTGCCAGTTTCCACTTGTGTCTCTATAATGAATTTGAACAAGTCCCTAGCT----TG 139274 || || || ||||| || | ||| || | ||| | | || ||||| | Sbjct 900638 GGCGTCCCGGTTTCTGTCTGCGACTCGATGA-----TTGCATA---CCATAGCTGCTGAG 900689 Query 139275 TATTTGACGCACG--TAAAGTT--CGTCGCGCTCGTACTTTTCGTAGAGTTCGTCGAATC 139330 || | |||| | | | | || ||| || | ||||||||| || || Sbjct 900690 CCTTCACCACACGCTTCACCCTCCCCTCCTTCTCATATCTGGTGTAGAGTTCTTCAAACT 900749 Query 139331 GTTCACCGTAGGCGTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCGACCATACGC 139390 || || || ||| || || | || | | | |||||||| || ||||| | Sbjct 900750 CCTCCCCCCAGCACTCATCCAGCCCGGGGCAGTCGGCCGGACACATCAGGGACCAGTCTT 900809 Query 139391 CGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATCGC 139450 |||| || || ||| ||||||| || || || ||||||| ||| | | || || | Sbjct 900810 CGTTGTTCTCCACCCGCTTCATGAAGAGGTCAGGGATCCACAGGGCGTAGAACAGGTCCC 900869 Query 139451 GCGCCTTCTTATCTTCCGAACCCATGTTACGTTTCATGTTAAGGAAATCAAAAACGTCAG 139510 || || || ||| ||| |||| |||| | ||||| ||||| || || Sbjct 900870 TGGCTCGCTGCTCCTCCTTTCCCGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACATCGA 900929 Query 139511 CGTGCCATGGTTCCAGATAGATGGCCATTGCGCC---TTTCCGTTTGCCACCTTGATCGA 139567 |||||| || ||||| || ||||| | ||||| | | ||||| || ||||| | Sbjct 900930 AGTGCCAGGGCTCCAGGTACATGGCGAAGGCGCCGGGTCTTTTGTTGCCCCCCTGATCAA 900989 Query 139568 CGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCCGT 139627 | | || | | || ||| | || | |||||| || | || ||| | | || | Sbjct 900990 CATAACGCGCTGTGTTGTTGTAAACCCTCAACATTGGGACGAGCCCGTTGGAACAGCCAT 901049 Query 139628 TGGTGCTACGGATGGGACTGTTGCGAGCTC-----GGACGTCATGTA---CATTG--ATG 139677 |||||| || | || ||| ||||| ||| | ||| | | || | | Sbjct 901050 TGGTGC--CG---GCGA-TGT----AGCTCCCCGTGGATCTAATGCAGCTGACTGCCACG 901099 Query 139678 CCGATTCCGCCGCCAAATTTGGATATTAAAACGCAATCGCGT-AATGTCTCGTATATACC 139736 || || || || | ||||||| || | |||||| || | | || ||||| || || Sbjct 901100 CCAATCCCTCCAGCTGATTTGGAGATGAGGGCGCAAT-GCTTCAGCGTGTCGTAGATCCC 901158 Query 139737 TCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGT 139796 |||||||| |||| ||| | || ||| ||||| || || ||||| || || Sbjct 901159 CTCGATGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCTGTTGGT 901218 Query 139797 GCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAA-CATTTGTTTCGACATCAATTCGT 139855 || || || || || || ||||| ||||| || || | | |||| || | || Sbjct 901219 TCCAGCATTGAAGAGGGTCGGGGAGGCGTGGGTGAACCACTTCTCT-GACAGCAGGTTGT 901277 Query 139856 ACGTTTCGATGGC-GCTCACAATATCCCTTCCGTGGATACCGACAGAGACTCGCATCAGC 139914 | || |||||| | ||| | |||||| | |||||||| || |||| || | ||| ||| Sbjct 901278 AGGTCTCGATGACTGCT-TCGATATCCGTCCCGTGGATTCCCACAGCCACCCTCATGAGC 901336 Query 139915 ATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtttttttCAGATAACCGTTCTCTAGG 139974 || || || || || || || ||| | ||| ||| ||| || | ||| || Sbjct 901337 ATGTGCTGCGGACGCTCAGCTACTTTGCCATTGATCTTTAGCAGGTAGGAGCGCTCCAGA 901396 Query 139975 GTCTTGTAGCCAAAGTACCTATAGTTGAAATC 140006 |||||| |||||||| | | ||| |||||| Sbjct 901397 GTCTTGAAGCCAAAGAAGTTGTAGGAGAAATC 901428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449852604616280