Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haplochromis_20burtoni_20[refseq_20GCF_5F000239415.1_202011-12-22] 8,001 sequences; 831,411,547 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq1090 201 2e-45 seq40 179 6e-39 seq2 127 3e-23 seq113 114 2e-19 seq19 91.5 2e-12 seq2861 89.7 8e-12 seq230 89.7 8e-12 >seq1090 Length=90682 Score = 201 bits (222), Expect = 2e-45 Identities = 191/244 (78%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| || || |||||||| ||||| || ||||||||| ||||||| || ||| | | Sbjct 27670 TGTACTTTGTCACAGCCTTGGTGCCCTCAGACACGGCGTGCTTGGCCAGCTCACCGGGGA 27611 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || ||||||||| |||||||||||||| | || | ||| ||| ||| ||||| | Sbjct 27610 GGAGCAGGCGCACTGCGGTCTGGATCTCCCTGGAGGTGATGGTGGAGCGTTTGTTGTAGT 27551 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | |||||||| ||||||| ||||||| |||| |||||||||||||||||||||| Sbjct 27550 GGGCCAGGCGAGATGCCTCGGCTGCGATGCGCTCGAAGATGTCGTTGACAAACGAGTTCA 27491 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||||| || ||||||||| |||||||| |||||||||| Sbjct 27490 TGATGCTCATGGCCTTGGAGGAGATCCCGGTGTCGGGGTGGACCTGCTTCAGCACCTTGT 27431 Query 1485710 AAAC 1485713 | || Sbjct 27430 ACAC 27427 >seq40 Length=2877665 Score = 179 bits (198), Expect = 6e-39 Identities = 186/244 (76%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||||||||| || ||||| || || |||||| ||||||| || ||| | | Sbjct 2103574 TGTACTTGGTGACGGCCTTTGTGCCCTCAGAAACTGCGTGCTTGGCCAGCTCACCGGGGA 2103633 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||| || |||||||||||||| | || | ||| ||| ||||||||| | Sbjct 2103634 GAAGCAGGCGAACTGCGGTCTGGATCTCCCTGGAGGTGATGGTGGAGCGCTTGTTGTAGT 2103693 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||||||| ||| || | | |||| || |||| ||||| ||||| ||||| |||| Sbjct 2103694 GGGCCAGGCGGGAGGCTTCAGCGGCGATACGCTCGAAGATGTCATTGACGAACGAATTCA 2103753 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | || |||||||| ||||||||| |||||||| || ||||||| Sbjct 2103754 TGATGCTCATGGCCTTAGACGAGATGCCGGTGTCGGGGTGGACCTGCTTCAGAACCTTGT 2103813 Query 1485710 AAAC 1485713 | || Sbjct 2103814 ACAC 2103817 >seq2 Length=7036168 Score = 127 bits (140), Expect = 3e-23 Identities = 166/227 (73%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || |||||||| | ||||| || ||| ||| Sbjct 2772474 TGTACTTGGTGACGGCCTTGGTTCCCTCAGACACGGCGTGTTTAGCCAGCTCCCCGGGCA 2772415 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| | ||| || || || | ||| | | || ||| ||| ||||||||| || | Sbjct 2772414 GCAGCAGCCTCACCGCAGTTTGCACCTCTCTGCTGGTGATGGTGGAGCGCTTGTT-GTAC 2772356 Query 1485590 -GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 | ||||||||| || || ||| | || | |||| || ||| ||||| || |||||| Sbjct 2772355 TGAGCCAGGCGGGACGCTTCTGTGGCAATCCTCTCGAACAGGTCATTGACGAAGGAGTTC 2772296 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTG 1485695 ||||| ||| | | || | || || ||| ||| || || ||||| Sbjct 2772295 ATGATGCTCATGGCTCTGCTCGAAATCCCCGTGTCCGGATGAACCTG 2772249 >seq113 Length=1687717 Score = 114 bits (126), Expect = 2e-19 Identities = 116/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 2069564 TCCACAGGCCGCGCGCCATCATGCGCTCGACCAGGTGGCGGTTGACCACGGTAAAGTCGC 2069623 |||||||||| | | | ||| | | || ||||||| ||||||| | ||| || | Sbjct 899892 TCCACAGGCCCCTCTCTGTCAGGTCTTTGAGCAGGTGGGGGTTGACGATCTGAAACTCCC 899951 Query 2069624 CCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTGATGACCTCGCACGCCTCGGTGTTGC 2069683 |||||||||| ||||| |||||||||||||| ||| | ||||| | |||| |||||| Sbjct 899952 CCGAGAGCACCCGGCGGGTGTAGATGTTGCTTGTGTAGGCCTCGATGGACTCGTTGTTGC 900011 Query 2069684 CCAGGATCTGCGACGTCGTGGCCGTGGGCAT 2069714 |||||||||| | || | |||||||||||| Sbjct 900012 CCAGGATCTGGGCGGTGGAGGCCGTGGGCAT 900042 Score = 109 bits (120), Expect = 9e-18 Identities = 273/421 (65%), Gaps = 0/421 (0%) Strand=Plus/Plus Query 2071574 ACTGGACGACCTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTCTGCTGGTTGC 2071633 ||| ||||| || ||||| |||||| || | |||||||||| ||||||||||||| Sbjct 900543 ACTCGACGATTTCCGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGATTCTGCTGGTTGC 900602 Query 2071634 TGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCG 2071693 | || |||| ||| || |||| | |||||| |||| || || || |||||| | Sbjct 900603 TCTTCCTGTTGCAGGCATCTTTGTAGACCATGTACGGCGTCCCGGTTTCTGTCTGCGACT 900662 Query 2071694 TGACGATGGCCGACCAAATTTGGCGCGCGGGCACCGAGGTCCTCGCGCGGCCCTNNNNNN 2071753 || ||| || |||| | || | || |||| | || | | |||| Sbjct 900663 CGATGATTGCATACCATAGCTGCTGAGCCTTCACCACACGCTTCACCCTCCCCTCCTTCT 900722 Query 2071754 NNNNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCGTGGCACTCGTGCAGGCCGGGCGCCT 2071813 |||| | ||||| | | || |||||| | ||| ||||| | Sbjct 900723 CATATCTGGTGTAGAGTTCTTCAAACTCCTCCCCCCAGCACTCATCCAGCCCGGGGCAGT 900782 Query 2071814 CGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCGCATAAACAGGTCGC 2071873 ||| ||| || | || |||||||| || || |||| || ||| || ||||| Sbjct 900783 CGGCCGGACACATCAGGGACCAGTCTTCGTTGTTCTCCACCCGCTTCATGAAGAGGTCAG 900842 Query 2071874 ACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTT 2071933 |||||||| |||| || || || | || || | ||||||||| || |||||| | Sbjct 900843 GGATCCACAGGGCGTAGAACAGGTCCCTGGCTCGCTGCTCCTCCTTTCCCGTGTTCTTCT 900902 Query 2071934 TCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGC 2071993 |||| || || |||| | | ||| |||||| ||||||||||| ||| ||||||| Sbjct 900903 TCAGCTCCAGGAAGTCAAACACATCGAAGTGCCAGGGCTCCAGGTACATGGCGAAGGCGC 900962 Query 2071994 C 2071994 | Sbjct 900963 C 900963 Score = 96.9 bits (106), Expect = 5e-14 Identities = 152/217 (70%), Gaps = 8/217 (4%) Strand=Plus/Plus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 ||| || ||||| ||||| |||| ||| | || | | ||| || || || |||||||| Sbjct 900982 CTGATCAACATAACGCGCTGTGTTGTTGTAAACCCTCAACATTGGGACGAGCCCGTTGGA 901041 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGC----GCACCTTGTGCGCGGCAA 2073655 ||| |||||||| || | |||| |||| || | ||| || | || | Sbjct 901042 ACAGCCATTGGTGCCGGCGATGTAGCTCCCCGTGGATCTAATGCAGCTGA----CTGCCA 901097 Query 2073656 AGCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGC 2073715 ||| || || || || | ||||||||||| ||||| | |||||||| |||||||| | Sbjct 901098 CGCCAATCCCTCCAGCTGATTTGGAGATGAGGGCGCAATGCTTCAGCGTGTCGTAGATCC 901157 Query 2073716 CCTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCA 2073752 ||||||| ||| |||||||| | | ||| ||||| Sbjct 901158 CCTCGATGCTGTCATCCTTCATGGCGAGCAGGAAGCA 901194 >seq19 Length=3626725 Score = 91.5 bits (100), Expect = 2e-12 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 796303 ACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGG 796362 |||||||| ||||||| || ||||||| ||||| ||||||||||| ||| || | || Sbjct 2020203 ACCTCCTCCACGGTCCAGAAAGAGGCCTGGGCCTGTTTGTACATCTTCCAGATGTCTCGG 2020144 Query 796363 TAGCGGATGGGGAACAGAACAAAGCGATTGGGGTTCTCGCGTAGCAGCGGCTC 796415 || ||||||| || | ||||| || |||||||||| || ||||| || || Sbjct 2020143 TACTGGATGGGAAAAATGACAAACCGCCTGGGGTTCTCTCGGAGCAGAGGTTC 2020091 >seq2861 Length=8583 Score = 89.7 bits (98), Expect = 8e-12 Identities = 102/136 (75%), Gaps = 1/136 (1%) Strand=Plus/Minus Query 794339 CACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCT 794398 ||||| |||| | ||||| | |||||| ||| ||||||||||| ||||| | || Sbjct 6310 CACCT-CGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCT 6252 Query 794399 TCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAA 794458 |||| ||||| |||||||| ||| |||||||| ||||| ||||| || ||||||| Sbjct 6251 TCTTCAGCCAGAAGATGGCGGCGAACGAACCCGAGAAGAAGATCCCCTCCACAGCGGCAA 6192 Query 794459 AGCCGACGAGCCGCTC 794474 || | || | ||||| Sbjct 6191 AGGCCACCACGCGCTC 6176 >seq230 Length=973959 Score = 89.7 bits (98), Expect = 8e-12 Identities = 102/136 (75%), Gaps = 1/136 (1%) Strand=Plus/Plus Query 794339 CACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCT 794398 ||||| |||| | ||||| | |||||| ||| ||||||||||| ||||| | || Sbjct 832636 CACCT-CGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCT 832694 Query 794399 TCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAA 794458 |||| ||||| |||||||| ||| |||||||| ||||| ||||| || ||||||| Sbjct 832695 TCTTCAGCCAGAAGATGGCGGCGAACGAACCCGAGAAGAAGATCCCCTCCACAGCGGCAA 832754 Query 794459 AGCCGACGAGCCGCTC 794474 || | || | ||||| Sbjct 832755 AGGCCACCACGCGCTC 832770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915395297137439