Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haplochromis_20burtoni_20[refseq_20GCF_5F000239415.1_202011-12-22] 8,001 sequences; 831,411,547 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq8 313 2e-79 seq235 98.7 7e-15 >seq8 Length=5219019 Score = 313 bits (346), Expect = 2e-79 Identities = 957/1467 (65%), Gaps = 12/1467 (1%) Strand=Plus/Plus Query 281416 TTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAAT 281475 ||| || |||| | ||||| ||||| || |||||||| | ||||||||| || || || Sbjct 3766119 TTTGTCCACGGCGGATACATTTAGAATGCCGTTGGCATCAATATCAAATGTTACCTCTAT 3766178 Query 281476 TTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATT 281535 || || || |||| |||| || ||||| ||| | | |||| | |||||| || Sbjct 3766179 CTGTGGAACACCTCGGGGAGCTGGAGGGATACCTGTGAGGTCAAATTTGCCCAGAAGGTT 3766238 Query 281536 ATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATT 281595 || | ||| || | || || || || || | || || || | | || || Sbjct 3766239 GTTGTATTTGGTCATGGCTCTCTCGCCTTCAAATACCTGAATCAATACACCTGGCTGGTT 3766298 Query 281596 ATCTGAATAAGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAA 281654 |||||| || || | || | |||| | | || || ||||| ||||||| | | Sbjct 3766299 ATCTGAGTATGTGGAGAAGA-TCTGAGTCTGCTTTGTGGGGATTGTGGTGTTTCGCTTTA 3766357 Query 281655 TAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAA 281714 | | | ||||||| ||| || || ||||| | || ||||| || |||| |||||| | Sbjct 3766358 TCAGAGGTGTCATAACACCGCCTGCGGTTTCAATGCCCAGAGACAGGGGAGCGACATCCA 3766417 Query 281715 CTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAG 281774 || | | || ||| | || || || | || | || || |||||||| | | Sbjct 3766418 GCAGCAGCAGATCTTGGACATTCTCTGAGGTGTCGCCCATGAGGATGGCTGCTTGGACTG 3766477 Query 281775 CAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGA 281834 | ||||| || || ||||||||||| || |||| | | || || | ||| ||||| | Sbjct 3766478 CTGCACCGTAGGCTACAGCTTCATCTGGGTTAATGCTCTTGTTCAGGTCTTTGCCATTAA 3766537 Query 281835 AAAAATT-TGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACA 281893 | || | || |||| || | | || ||||| | | || || || || | ||| Sbjct 3766538 AGAAGTCCTGTAAGAGCTTCTGG-ATTTTGGGAATTCTTGTGGAGCCACCGACCAGGACA 3766596 Query 281894 ATTTCATGCA-CCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTC 281952 |||||||| | |||| ||||||||||| || | |||| | |||| ||||| || | Sbjct 3766597 ATTTCATGAATCCTG-GATTTATCCAGCTTGGCATCCTGCAGGGCTTTCTCAACTGGGCC 3766655 Query 281953 AAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGAC 282012 ||| | || || | ||||| || || || || || || || | | | Sbjct 3766656 AAGTGTTCCCCTGAAAAGATCTGAGTTGAGCTCCTCAAAACGTGCCCTTGTGATGGAGGT 3766715 Query 282013 ATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGA 282072 | | |||||||||| || || | ||| || | ||||| | | ||||| || || Sbjct 3766716 GTAAAAATCAATTCCCTCAAAGAGAGAGTCGATCTCAATGCTTGCCTGAGTGCTGGAGGA 3766775 Query 282073 TAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG 282132 || | | || || | ||||| ||||| | | ||| | | ||| | || ||| Sbjct 3766776 TAAGGTCCTCTTTGCCCTCTCACAAGCTGTACGCAATCTCCTCACTGCTCT--CTTATTC 3766833 Query 282133 ATTCAAATCTGTTT--TATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGA 282190 | ||| | || ||| |||||| || || || || ||| | | || | | Sbjct 3766834 TGGCTAATGTCCTTCTTATGTTTTCTTTTAAATTCCTCTACAAAGTGCTTGACCATTTGG 3766893 Query 282191 TTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGT 282250 || ||||| || || || || | | || | |||||| || ||| | || | || | Sbjct 3766894 TTGTCAAAGTCCTCCCCACCAAGGTGTGTGTCTCCTGAAGTGGCTTTGACCTCAAAGATG 3766953 Query 282251 CCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGT 282310 ||| |||||| | || || || |||||| ||| || || || | |||||| || || Sbjct 3766954 CCAGCTTCAATGGTCAGAATAGACACATCAAAGGTGCCTCCGCCAAGATCAAAGATCAGC 3767013 Query 282311 ACATTCATTTCTT-TGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGG 282369 ||||| |||| ||| ||| ||| ||| || ||||| |||| || || || || || Sbjct 3767014 ACATTGCGTTCTCCTGTTTTGCCTTT-ATCCAGGCCATATGCAATGGCTGCTGCTGTGGG 3767072 Query 282370 TTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTG 282429 |||||||| || |||| |||||| || |||| || || ||||| || || ||||| Sbjct 3767073 CTCATTAATGATCCTCAGAACATTTAGTCCAGAGATCACCCCAGCATCCTTGGTAGCTTG 3767132 Query 282430 TCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCC 282489 ||| || || ||||| ||||| || || || || || || || | || || || ||| Sbjct 3767133 TCTCTGGGAGTCGTTGAAATAAGCTGGCACTGTGATGACTGCGTTTGACACCCTTTGTCC 3767192 Query 282490 AATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGG 282549 | || || ||| | | ||||||||| | | ||| || ||||||| || || Sbjct 3767193 CAGGTAGGCCTCAGCTATCTCCTTCATTTTAACCAGGACCATGGAGGAAATTTCCTCAGG 3767252 Query 282550 AGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATT 282609 | | || ||||| || || ||| || | | | || || | | | | Sbjct 3767253 ATAGAATGCCTTGGTCTCCCCTTTGTATTCCACCTGGACTTTGGGCTTTCCATTATCGTC 3767312 Query 282610 AATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCT 282669 ||| || || || ||||| ||||| || || || || | |||||||||| | ||| Sbjct 3767313 AATCACCTTGAAAGGCCAGAGCTTCATGTCGGACTGTACGACTGGGTCATTAAACTTTCT 3767372 Query 282670 ACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTT 282729 ||||| | ||||| |||||||| || || || | || || | |||| |||| | || Sbjct 3767373 TCCAATCAGCCGTTTGGCATCAAAGATTGTGTTATTGGGGTTCATTGCAACTTGGTTCTT 3767432 Query 282730 GGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCG 282789 ||| ||||||||||| || |||||| || ||||| | ||||| |||||| || | Sbjct 3767433 GGCAGCATCTCCAATAAGCCTTTCTGTGTCGGTAAAAGCCACATAGCTTGGAGTGGTTCT 3767492 Query 282790 ATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACT 282849 ||| || ||||| || ||||| || |||||||| |||| || | || || |||||| Sbjct 3767493 ATTGCCCTGATCGTTGGCAATGATCTCAACTTTGCCATGCTGGAAAACCCCAACACAAGA 3767552 Query 282850 AAAAGTTGTTCCTAAATCAATACCAAT 282876 | | || || || | |||||| ||||| Sbjct 3767553 ATAGGTGGTGCCCAGATCAATGCCAAT 3767579 >seq235 Length=965616 Score = 98.7 bits (108), Expect = 7e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || || ||||| |||| |||||||| || || ||||| || || | | ||| Sbjct 552626 TTTTTGTCCAGGCCATAGGCAATGGCAGCAGCGGTGGGCTCATTGATGATACGAAGGACA 552685 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 ||||| |||| ||| | ||||||||||| ||||| || | || || ||||| || || Sbjct 552686 TTAAGCCCAGAAATGGTCCCTGCATCTTTGGTGGCCTGGCGCTGAGAGTCGTTGAAGTAG 552745 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTAC 282480 ||||| ||||| | ||| || |||||| Sbjct 552746 GCAGGCACAGTCACTACGACACTTGTTAC 552774 Score = 87.8 bits (96), Expect = 1e-11 Identities = 131/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749 |||| || || ||| |||| || | || |||| | ||||||||||| |||||||| Sbjct 553262 CAAATATTGTGTTGTTTGGGTTCAAGGCCACTTGGTTCTTGGCTGCATCCCCAATCAGCC 553321 Query 282750 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 282809 ||||| || || |||| |||||| || || || | || || || ||||| |||| Sbjct 553322 TCTCTGTGTCAGTGAATGCAACATAGCTGGGTGTAGTCCTGTTTCCCTGGTCATTGGCAA 553381 Query 282810 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 282869 | ||||| ||||| |||| || | || |||||||| | || || || | |||| Sbjct 553382 TGATTTCCACTTTGCCATGCTGAAAAACTCCTACACAGGAGTAGGTAGTGCCCAGGTCAA 553441 Query 282870 TACCAA 282875 |||||| Sbjct 553442 TACCAA 553447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740237584712226