Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haplochromis_20burtoni_20[refseq_20GCF_5F000239415.1_202011-12-22] 8,001 sequences; 831,411,547 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq113 208 7e-49 seq47 113 4e-20 seq2861 89.7 5e-13 seq230 89.7 5e-13 >seq113 Length=1687717 Score = 208 bits (230), Expect = 7e-49 Identities = 974/1529 (64%), Gaps = 42/1529 (3%) Strand=Plus/Plus Query 148237 TCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCA 148296 ||||||| | || ||| | | || || | ||||||||| || | |||||| || || Sbjct 899910 TCAGGTCTTTGAGCAGGTGGGGGTTGACGATCTGAAACTCCCCCGAGAGCACCCGGCGGG 899969 Query 148297 GATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCG 148356 || | |||||| || | | || | |||||||||||||||| ||||| ||||| | Sbjct 899970 TGTAGATGTTGCTTGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGG 900029 Query 148357 TTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTT---TATTT 148413 ||||||||||| | | |||||| ||| | || ||| || ||| || | Sbjct 900030 AGGCCGTGGGCATTGGGGACAGCAGCAGGCTGTTCCTCA---CGCCATGTTTGGCGATCT 900086 Query 148414 TGCGCTTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACT 148473 | |||||| | ||||||||| || || || ||| | |||||||||||||| Sbjct 900087 TCTCCTTCAGCAGCTTCCAGTCCCACAGGTCCGTTGGCGTCTTCTCCCACATGTCGTACT 900146 Query 148474 GCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCG 148533 | |||||||| || | || ||| ||||||| ||| | || || | || | Sbjct 900147 GGAGAATGCCCTTACTCACCGGCGAGCCTTCGTACGTCTCGTAGGTGCCAAGCTCGGCGG 900206 Query 148534 CCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGA 148593 |||| ||||||||||| || | ||| | || || || ||||| || || |||||| Sbjct 900207 CCAGCTCGCAGCTCGCTTCCAAAGCGGCATAATACATAGTCTCAAAGATCTGGATGTTGA 900266 Query 148594 GCAGCGCCGCCGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGC 148653 |||| ||| |||||| | || ||||| | | || || || || | | Sbjct 900267 GCAGTTGAGCCTCGGGGCTTTCAAAGGGATAACGCATAAGGATGAAGGCATCAGCCAATC 900326 Query 148654 CCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGCG 148713 |||| || || | || || |||| ||| ||||| || | || || | || Sbjct 900327 CCTGGACCCCGATTCCTATCGGCCTGTGGCGCATGTTCGACCTCCTGGCTTCTTCCACCG 900386 Query 148714 GATAGTGGTTGCGGTCGATGATCTTG-TCAAGATTGCGCACCACCACCTTTGT-AATTCT 148771 | |||| |||| |||||| | |||| ||||| || | || | || || || | | Sbjct 900387 GGTAGTAGTTGATGTCGATAACCTTGTTCAAG-TTCCTGACAATTACTTTGGTCACGGAT 900445 Query 148772 GCGCAGCAATTCAAAATCGTA---CTTGTCATCTACGATGCATCGGTTCACGGCGATAGA 148828 || || || ||| || || | ||| || | | ||| | |||| ||| Sbjct 900446 GC-CAATTTTTTAAAGTCATAAGTCCGCTCAGGGGTGACGTACATGTTGAGAGCGACAGA 900504 Query 148829 GGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAG 148888 ||| |||||||| || ||| ||| ||| | ||||||| ||||| || | ||| || Sbjct 900505 GGCCAGATTGCAAACCGCCACCTCGTCCTTGCTAGTGTACTCGACGATTTCCGTGCAGAG 900564 Query 148889 ATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTT 148948 |||||||| ||||| ||||| |||| || |||||||| |||||||| || || || Sbjct 900565 GTTGCTGCACTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCATCTTT 900624 Query 148949 GTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTAT---GAACC---GATG 149002 ||| | ||||||||| || ||||| ||||| || | || ||| | || Sbjct 900625 GTAGACCATGTACGGCGTCCCGGTTTCTGTCTGCGACTCGATGATTGCATACCATAGCTG 900684 Query 149003 CAGGTCCTGCGCGCGCACTTGCTGCTCGTAGCGACCCTCCTGCTCGTATAAAGTATACAG 149062 | | ||| | | ||| ||| | | | ||||||| ||| ||| || || || Sbjct 900685 CTGAGCCTTCAC---CACACGCTTCAC---CCTCCCCTCCTTCTCATATCTGGTGTAGAG 900738 Query 149063 CCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAG 149122 || ||| |||| || |||| || || || |||||||| | | ||| ||||| || Sbjct 900739 TTCTTCAAACTCCTCCCCCCAGCACTCATCCAGCCCGGGGCAGTCGGCCGGACACATCAG 900798 Query 149123 CGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTA 149182 ||||| | ||| | ||| |||||||| || || || || | ||| || ||||| Sbjct 900799 GGACCAGTCTTCGTTGTTCTCCACCCGCTTCATGAAGAGGTCAGGGATCCACAGGGCGTA 900858 Query 149183 CATGAGGTCGCGCGCCTTGCAG-TCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGC 149241 | ||||| | | || || | || || ||| |||| ||| | || | | Sbjct 900859 GAACAGGTC-CCTGGCTCGCTGCTCCTCCTTTCCCGTGTTCTTCTTCAGCTCCAGGAAGT 900917 Query 149242 TGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCC----CTTGCGCTTG 149297 || | || |||||| ||||| | ||||| |||| ||||| ||| | ||| Sbjct 900918 CAAACACATCGAAGTGCCAGGGCTCCAGGTACATGGCGAAGGCGCCGGGTCTTTTG-TTG 900976 Query 149298 CCGCCCTGGTCGACGTGGCGCACCATGTTGT--TAAACACTCGAACCATAGGTTCAATGC 149355 || ||||| || || | ||| | |||||| ||||| ||| | ||| || | | | Sbjct 900977 CCCCCCTGATCAACATAACGCGCTGTGTTGTTGTAAACCCTC--AACATTGGGACGAGCC 901034 Query 149356 CACTGGCAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGT 149415 | ||| | ||| || || | ||| || || | || | | || Sbjct 901035 CGTTGGAACAGCCATTGGTGCCGGCGATGTAGCTCCCCGTGGATCTAATGCAGCTGACTG 901094 Query 149416 TGACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTAGA 149475 ||||| || || || | | || |||||| ||||| | ||||| ||||| Sbjct 901095 CCACGCCAATCCCTCCAGCTGATTTGGAGATGAGGGCGCAATGCTTCAGCGTGTCGTAGA 901154 Query 149476 TGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAAC 149535 | |||||||||||||| |||||||| ||||| ||||| | ||| ||||| Sbjct 901155 TCCCCTCGATGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCTGT 901214 Query 149536 GCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCATCATCT 149595 || || || ||| | ||| ||| |||||| || || | |||| || || | Sbjct 901215 TGGTTCCAGCATTGAAGAGGGTCGGGGAGGCGTGGGTGAACCACTTCTCTGACAGCAGGT 901274 Query 149596 CGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCA 149655 ||| | ||||| || || || || || ||||| || | || || | ||| | Sbjct 901275 TGTAGGTCTCGATGACTGCTTCGATATCCGTCCCGTGGATTCCCACAGCCACCCTCATGA 901334 Query 149656 GCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCA---ATTTTGAGCAAGTAGCCGTTTT 149712 |||| |||||||| ||||| || |||||| ||| || || |||| |||| | | Sbjct 901335 GCATGTGCTGCGGACGCTCAGCTACTTTG---CCATTGATCTTTAGCAGGTAGGAGCGCT 901391 Query 149713 CTAGTGTCTTGTAGCCAAAGTACTTGTAG 149741 | || |||||| |||||||| | |||||| Sbjct 901392 CCAGAGTCTTGAAGCCAAAGAAGTTGTAG 901420 >seq47 Length=2629205 Score = 113 bits (124), Expect = 4e-20 Identities = 97/120 (81%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 148864 TGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGAT 148923 |||||||||||||||| | ||||||||||||| ||||||| ||||| ||| | |||| Sbjct 775289 TGTACTCTACGATCTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGGTTTTGCTGAT 775348 Query 148924 TGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCG 148983 | ||||| |||||||| || |||||||| | |||||| ||| |||||||| ||||| Sbjct 775349 TACTCTTTCTGTTGCAGGCATCCTTGTAAACCATGTATGGTGTACCAGTTTCTGTCTGCG 775408 >seq2861 Length=8583 Score = 89.7 bits (98), Expect = 5e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 120679 ATCAGCTCGTTGCTAAACGTCAGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATG 120738 || ||||||||| || |||||||||||||| | |||| || |||| | |||| ||| Sbjct 6294 ATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCTTCAGCCAGAAGATG 6235 Query 120739 GCGGCAAAGCTGCCCGAAAAGAACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTC 120797 ||||| || ||||| ||||| | |||||||| ||||||||| |||| |||||| Sbjct 6234 GCGGCGAACGAACCCGAGAAGAAGATCCCCTCCACAGCGGCAAAGGCCACCACGCGCTC 6176 >seq230 Length=973959 Score = 89.7 bits (98), Expect = 5e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 120679 ATCAGCTCGTTGCTAAACGTCAGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATG 120738 || ||||||||| || |||||||||||||| | |||| || |||| | |||| ||| Sbjct 832652 ATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCTTCAGCCAGAAGATG 832711 Query 120739 GCGGCAAAGCTGCCCGAAAAGAACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTC 120797 ||||| || ||||| ||||| | |||||||| ||||||||| |||| |||||| Sbjct 832712 GCGGCGAACGAACCCGAGAAGAAGATCCCCTCCACAGCGGCAAAGGCCACCACGCGCTC 832770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483372451877240