Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haplochromis_20burtoni_20[refseq_20GCF_5F000239415.1_202011-12-22] 8,001 sequences; 831,411,547 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq169 111 2e-19 >seq169 Length=1275875 Score = 111 bits (122), Expect = 2e-19 Identities = 240/354 (68%), Gaps = 9/354 (3%) Strand=Plus/Minus Query 176946 GCCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAA 177005 |||| ||| | || || || |||||| || |||||||| | ||||||| ||| | Sbjct 388733 GCCAATTCCTTGGGCGAGCTGAAGTCGTCAACATGAATGAAGGAGTCTCCCTGGATAAAG 388674 Query 177006 TTTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGAT 177065 || |||||||||| || | || ||||| || | || || | || | | |||| Sbjct 388673 TTCTCGTAATTCTGCCTGGGTGGGCCGAGAACCACTGGCACTGTCCCCAC--TGAGAGTG 388616 Query 177066 CG--GTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGA 177123 | ||| ||||| || ||||| || || |||| | ||||||||||||||| ||||||| Sbjct 388615 GGTTGTACAGTTTCTCAGTAATGTAATCTTTGTGGATGGAGTTCTCAAACGCCAGATAGA 388556 Query 177124 ATTTACAG--GAAGATAGTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTAC 177181 | || ||| | ||| || |||| | |||| | || | || || || || | | Sbjct 388555 ACTTGCAGCTGGCGATGGT--GGGGAAGTAGTCTTGGTCAGAGATGTACTCCCCAAAGGC 388498 Query 177182 GTTCCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGATCTCAC 177241 | || ||| |||| | || |||||||| ||| || || ||| || | ||| Sbjct 388497 CTGTCCATATGCATGAACCTCAATGTGTTTGTAGAGTTCATTATAATATTTCACCCGCAC 388438 Query 177242 GTGGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGCGGG 177295 ||| || | |||||| ||||| || | |||||||| | |||| | ||||| || Sbjct 388437 GTGATCCTGGTTCCAGTTGCTTACAATCCAGCAAATCAGCTTG-TTTTTGCTGG 388385 Score = 82.4 bits (90), Expect = 9e-11 Identities = 158/230 (69%), Gaps = 5/230 (2%) Strand=Plus/Minus Query 177068 GTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAATTT 177127 ||| ||||| | |||||||| || |||| | ||||||||||||||| ||||||||||| Sbjct 399525 GTAAAGTTTCTATGTAATATAATCTTTGTGGATGGAGTTCTCAAACGCCAGATAGAATTT 399466 Query 177128 ACA--GGAAGATAGTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGTTC 177185 || | ||| || |||| | |||| | || | || || | || | | | Sbjct 399465 GCAACTGGTGATGGT--GGGGAAGTAGTCTTGGTCAGAGATGTATTTCCCGAAGGCCTGT 399408 Query 177186 CCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGATCTCACGTGG 177245 || ||| |||| | || |||||||| ||| || || ||| || | |||||| Sbjct 399407 CCATATGCATGAACCTCAATGTGTTTGTAGAGTTCATTATAATATTTCACCCGCACGTGA 399348 Query 177246 TCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGCGGG 177295 || | |||||| ||||| || | |||||||| | |||| | ||||| || Sbjct 399347 TCCTGGTTCCAGTTGCTTACAATCCAGCAAATCAGCTTG-TTTTTGCTGG 399299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578374149569600