Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haplochromis_20burtoni_20[refseq_20GCF_5F000239415.1_202011-12-22] 8,001 sequences; 831,411,547 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq113 161 9e-35 >seq113 Length=1687717 Score = 161 bits (178), Expect = 9e-35 Identities = 959/1512 (63%), Gaps = 50/1512 (3%) Strand=Plus/Plus Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGC 146952 ||||| | |||||||| |||| ||||| || | | || | ||||| ||| | | | Sbjct 899933 TTGACGATCTGAAACTCCCCCGAGAGCACCCGGCGGGTGTAGATGTTGCTTGTGTAGGCC 899992 Query 146953 TCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACC 147012 || | ||||| || ||||| | || ||||| |||| || || ||||| | || | Sbjct 899993 TCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATTGGGGACAGC 900052 Query 147013 AACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAA-AGTTTGCCAGTCCCA 147071 | || || | || || | ||| || ||||||| || || ||||||||| Sbjct 900053 AGCAGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCCTTCAGCAGCTT-CCAGTCCCA 900111 Query 147072 CATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGACT 147131 || || |||||| | |||||||||||||||||| | || ||| | || Sbjct 900112 CAGGTCCGTTGGCGTCTTCTCCCACATGTCGTACTGGAGAATGCCCTTACTCACCGGCGA 900171 Query 147132 GCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCG-CCAATTCACAGCTTGCCTCGAGCG 147190 ||| || |||| |||| | || || | ||| ||| || ||||| || || | | Sbjct 900172 GCCTTCGTACGTCTCGTAGGTGCCAA-GCTCGGCGGCCAGCTCGCAGCTCGCTTCCAAAG 900230 Query 147191 CTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTCGT 147250 | |||| || || || || ||| || |||| || | || || ||| || Sbjct 900231 CGGCATAATACATAGTCTCAAAGATCTGGATGTTGAGCAGTTGAGCCTCGGGGCTTTCA- 900289 Query 147251 AAGGCATA-CGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGGT 147309 |||| ||| |||| ||| | |||||||| ||||| ||||||| |||| || || || Sbjct 900290 AAGGGATAACGCATAAGGATGAAGGCATCAGCCAATCCCTGGACCCCGATTCCTATCGGC 900349 Query 147310 CGATGC----TTTTCGT--TGCTGCGCTTCGCGCTCGCTATGGGATAGTGGTTGCGATCA 147363 | || | |||| | ||| ||||| | | || |||| |||| || Sbjct 900350 CTGTGGCGCATGTTCGACCTCCTG-GCTTCTTCCACC-----GGGTAGTAGTTGATGTCG 900403 Query 147364 ATAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCA 147423 |||| |||||| | ||| | || | ||||| || | | | | ||| | || ||| Sbjct 900404 ATAACCTTGTTCAAGTTCCTGACAATTACTTTGGTCACGGATGCCAATTTTTTAAAGTCA 900463 Query 147424 TAAGTCCCGTCTTCGAC-ACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGAC 147482 ||||||| || | |||||| || ||| | |||| ||| ||||||||||| || Sbjct 900464 TAAGTCCGCTCAGGGGTGACGTAC--AT--GTTGAGAGCGACAGAGGCCAGATTGCAAAC 900519 Query 147483 GGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTAT 147542 ||| ||| || | |||||| |||||||| | ||| ||||||||||| || || Sbjct 900520 CGCCACCTCGTCCTTGCTAGTGTACTCGACGATTTCCGTGCAGAGGTTGCTGCACTTGAT 900579 Query 147543 GACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGG 147602 | |||| ||| ||||| ||||| |||| ||||| || |||||| ||| ||||||||| Sbjct 900580 GGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCATCTTTGTAGACCATGTACGG 900639 Query 147603 TCCGCCGGTCTCGACTTGCGTTTCAACGAT---AAACCTATGCAGGTCCTGCGC--TC-G 147656 ||||| || |||| || | ||| | ||| || || | ||| || || Sbjct 900640 CGTCCCGGTTTCTGTCTGCGACTCGATGATTGCATACC-AT--AGCTGCTGAGCCTTCAC 900696 Query 147657 CACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTC 147716 ||| |||| | | ||||| || || || | ||| | |||||||| || Sbjct 900697 CACACGCTTC---ACCCTCCCCTCCTTCTCATATCTGGTGTAGAGTTCTTCAAACTCCTC 900753 Query 147717 GCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTC 147776 || |||| || | || ||||| || | |||||||||||| ||||| ||| || Sbjct 900754 CCCCCAGCACTCATCCAGCCCGGGGCAGTCGGCCGGACACATCAGGGACCA---GTCTTC 900810 Query 147777 CGCGTT---AACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGC- 147832 ||| || || ||| || || || || | |||||| ||||| | || || | Sbjct 900811 GTTGTTCTCCACCCGCTTCATGAAGAGGTCAGGGATCCACAGGGCGTAGAACAGGTCCCT 900870 Query 147833 -GCGCTTTGCAATCCTCGGCGCCCATGTTGCGTTTCAAATTAAGCACGCTATAGATGTCG 147891 || | ||| ||||| ||| |||| |||| | || | | | | | ||| Sbjct 900871 GGCTCGCTGC--TCCTCCTTTCCCGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACATCG 900928 Query 147892 GCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACC---TTTACGCTTTCCGCCCTGGTCG 147948 ||||||||| || | ||| | ||| | || || | | || || ||||| || Sbjct 900929 AAGTGCCAGGGCTCCAGGTACATGGCGAAGGCGCCGGGTCTTTTGTTGCCCCCCTGATCA 900988 Query 147949 ACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCG 148008 |||| ||| | ||||||| | || | || ||| || | || ||| | | | ||| Sbjct 900989 ACATAACGCGCTGTGTTGTTGTAAACCCTCAACATTGGGACGAGCCCGTTGGAACAGCCA 901048 Query 148009 TTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCCG 148068 |||||| ||| | ||| || || || | | || |||||||| || Sbjct 901049 TTGGTGCCGGCGATGTAGCTCCCCGTGGATCTAATGCAGCTGACTGCCACGCCAATCCCT 901108 Query 148069 CCGCCGTACTTTGATATGGCAGCGCAATCGCCCAATGTCGTGTAGATGCCGTCGATGCTG 148128 || | | || || ||| ||||||| || || |||||| || ||||||||| Sbjct 901109 CCAGCTGATTTGGAGATGAGGGCGCAATGCTTCAGCGTGTCGTAGATCCCCTCGATGCTG 901168 Query 148129 TCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTTCCCGCCGAG 148188 || | || | | | |||| || || ||| ||||| | ||||| || | Sbjct 901169 TCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCTGTTGGTTCCAGCATTG 901228 Query 148189 AAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGATACGTCTCAATA 148248 || ||||| || ||||| || ||| | || | || || | || ||||| || Sbjct 901229 AAGAGGGTCGGGGAGGCGTGGGTGAACCACTTCTCTGACAGCAGGTTGTAGGTCTCGATG 901288 Query 148249 GCGTCTTCGATGT-CGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGG 148307 | ||||||| | |||| ||||| || |||| || || | ||||||||||||||| || Sbjct 901289 ACTGCTTCGATATCCGTC-CCGTGGATTCCCACAGCCACCCTCATGAGCATGTGCTGCGG 901347 Query 148308 TCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGTAACC 148367 || || || |||| |||||||| || || || || || || ||| | || Sbjct 901348 ACGCTCAGCTACTTTGCCATTGATCTTTAGCAGGTAGGAGCGCTCCAGAGTCTTGAAGCC 901407 Query 148368 AAAGTACTTGTA 148379 |||| | ||||| Sbjct 901408 AAAGAAGTTGTA 901419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476563532922360