Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haplochromis_20burtoni_20[refseq_20GCF_5F000239415.1_202011-12-22] 8,001 sequences; 831,411,547 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq52 104 7e-19 seq396 98.7 3e-17 seq67 98.7 3e-17 seq10 98.7 3e-17 seq8 98.7 3e-17 seq4 98.7 3e-17 seq417 78.8 3e-11 >seq52 Length=2482166 Score = 104 bits (114), Expect = 7e-19 Identities = 71/80 (89%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 2761 TGTTTATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTG 2820 ||| | |||| ||| |||||||||||||||||| |||||||||||||||||||||||||| Sbjct 92743 TGTGTGTGGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTG 92802 Query 2821 GTTCAACCCCGGGCTTCAGC 2840 |||| | |||||| ||| || Sbjct 92803 GTTCGATCCCGGGTTTCGGC 92822 >seq396 Length=570141 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 31512 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 31571 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 31572 CCGGGTTTCGGC 31583 >seq67 Length=2271746 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 976234 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 976293 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 976294 CCGGGTTTCGGC 976305 >seq10 Length=4620461 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 1587687 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 1587628 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 1587627 CCGGGTTTCGGC 1587616 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 1591096 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 1591037 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 1591036 CCGGGTTTCGGC 1591025 Score = 96.9 bits (106), Expect = 1e-16 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | Sbjct 1588865 GGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGAT 1588806 Query 2828 CCCGGGCTTCAGC 2840 || ||| ||| || Sbjct 1588805 CCTGGGTTTCGGC 1588793 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| ||||||||||||||| |||||||||||||| | | Sbjct 1538225 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTGAAGGTCCCTGGTTCGATC 1538166 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 1538165 CCGGGTTTCGGC 1538154 >seq8 Length=5219019 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 1269442 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 1269501 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 1269502 CCGGGTTTCGGC 1269513 >seq4 Length=5896988 Score = 98.7 bits (108), Expect = 3e-17 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 2764 TTATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTT 2823 || |||| ||| |||||||||||||||||| | ||||||||||||| ||||||||||||| Sbjct 3260569 TTGTGGCCGAAATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCCCTGGTT 3260628 Query 2824 CAACCCCGGGCTTCAGC 2840 ||| |||||| ||| || Sbjct 3260629 CAATCCCGGGTTTCGGC 3260645 Score = 95.1 bits (104), Expect = 4e-16 Identities = 69/80 (86%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 2761 TGTTTATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTG 2820 ||||| | || ||| |||||||| ||||||||| | ||||||||||||| |||||||||| Sbjct 5172556 TGTTTGTTGCCGAAATAGCTCAGCTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCCCTG 5172497 Query 2821 GTTCAACCCCGGGCTTCAGC 2840 |||||| |||||| ||| || Sbjct 5172496 GTTCAATCCCGGGTTTCGGC 5172477 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| | ||||||||||||| |||||||||||||||| | Sbjct 5172898 GCCGAAATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCCCTGGTTCAATC 5172839 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 5172838 CCGGGTTTCGGC 5172827 Score = 91.5 bits (100), Expect = 5e-15 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 2766 ATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCA 2825 || || ||| |||||||||||||||||| | ||||||||| ||| ||||||||||||||| Sbjct 3259216 ATAGCCGAAATAGCTCAGTTGGGAGAGCGTCAGACTGAAGCTCTGAAGGTCCCTGGTTCA 3259275 Query 2826 ACCCCGGGCTTCAGC 2840 | |||||| ||| || Sbjct 3259276 ATCCCGGGTTTCGGC 3259290 Score = 91.5 bits (100), Expect = 5e-15 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 2766 ATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCA 2825 || || ||| |||||||||||||||||| | ||||||||||||| |||| |||||||||| Sbjct 5173853 ATTGCCGAAATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGCCCCTGGTTCA 5173794 Query 2826 ACCCCGGGCTTCAGC 2840 | |||||| ||| || Sbjct 5173793 ATCCCGGGTTTCGGC 5173779 Score = 89.7 bits (98), Expect = 2e-14 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| ||||||||| |||||||| | ||||||||||||| |||||||||||||||| | Sbjct 3261601 GCCGAAATAGCTCAGTAGGGAGAGCGTCAGACTGAAGATCTGAAGGTCCCTGGTTCAATC 3261542 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 3261541 CCGGGTTTCGGC 3261530 >seq417 Length=530319 Score = 78.8 bits (86), Expect = 3e-11 Identities = 52/58 (90%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 || ||| |||||||||||||||||| | | ||||||||||| |||||||||||||||| Sbjct 234406 GCCGAAATAGCTCAGTTGGGAGAGCGTCACACTGAAGATCTGAAGGTCCCTGGTTCAA 234349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15848212986645