Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haplochromis_20burtoni_20[refseq_20GCF_5F000239415.1_202011-12-22] 8,001 sequences; 831,411,547 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1090 185 1e-40 seq40 136 6e-26 seq113 120 4e-21 seq2861 89.7 7e-12 seq230 89.7 7e-12 >seq1090 Length=90682 Score = 185 bits (204), Expect = 1e-40 Identities = 179/229 (78%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||| |||||| |||| || |||||||| | ||||| Sbjct 27430 TACAAGGTGCTGAAGCAGGTCCACCCCGACACCG---GGATCTCCTCCAA---GGCCATG 27483 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||||||||||||||| |||| ||||||| ||||||| |||| Sbjct 27484 AGCATCATGAACTCGTTTGTCAACGACATCTTCGAGCGCATCGCAGCCGAGGCATCTCGC 27543 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || |||||| ||| ||| ||| | | | |||||||||||||| |||||| Sbjct 27544 CTGGCCCACTACAACAAACGCTCCACCATCACCTCCAGGGAGATCCAGACCGCAGTGCGC 27603 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| || | | ||| || ||||||| ||||||||| || |||||||||| Sbjct 27604 CTGCTCCTCCCCGGTGAGCTGGCCAAGCACGCCGTGTCTGAGGGCACCA 27652 >seq40 Length=2877665 Score = 136 bits (150), Expect = 6e-26 Identities = 167/227 (74%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 |||||||| || |||||||| |||||| |||| |||| || ||| ||||| Sbjct 2103814 TACAAGGTTCTGAAGCAGGTCCACCCCGACACCGG-----CATC-TCGTCTAAGGCCATG 2103761 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||| ||||| ||||| ||||| |||| || |||| | | || ||| ||| Sbjct 2103760 AGCATCATGAATTCGTTCGTCAATGACATCTTCGAGCGTATCGCCGCTGAAGCCTCCCGC 2103701 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || |||||||||| ||| ||| | | | |||||||||||||| || ||| Sbjct 2103700 CTGGCCCACTACAACAAGCGCTCCACCATCACCTCCAGGGAGATCCAGACCGCAGTTCGC 2103641 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||| | | | ||| || ||||||| |||||| || || |||||||| Sbjct 2103640 CTGCTTCTCCCCGGTGAGCTGGCCAAGCACGCAGTTTCTGAGGGCAC 2103594 >seq113 Length=1687717 Score = 120 bits (132), Expect = 4e-21 Identities = 137/184 (74%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 262915 CATGGCCTGCGCAACTCGTTGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATC 262974 |||||| || | ||| |||| || | | |||||||||||| | || | |||||| Sbjct 900075 CATGGCGTGAGGAACAGCCTGCTGCTGTCCCCAATGCCCACGGCCTCCACCGCCCAGATC 900016 Query 262975 CTGGGCAACACCGAGGCGTTCGAGGTCATCACGAGCAACATCTACACGCGCCGCGTGCTC 263034 |||||||||| |||| | |||||| | ||| |||||||||||||| ||||| |||||| Sbjct 900015 CTGGGCAACAACGAGTCCATCGAGGCCTACACAAGCAACATCTACACCCGCCGGGTGCTC 899956 Query 263035 TCGGGCGACTTTACCGTGGTCAACCGCCACCTGGTCAAGCGCATGGTGGCGCGCGGCCTG 263094 ||||| || ||| | ||||||| ||||||| |||| | || | | | |||||| Sbjct 899955 TCGGGGGAGTTTCAGATCGTCAACCCCCACCTGCTCAAAGACCTGACAGAGAGGGGCCTG 899896 Query 263095 TGGA 263098 |||| Sbjct 899895 TGGA 899892 Score = 100 bits (110), Expect = 4e-15 Identities = 197/291 (68%), Gaps = 8/291 (3%) Strand=Plus/Minus Query 259896 TGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCC 259955 |||| || ||| ||||||| || | || || ||||| ||||| || || | | Sbjct 901268 TGTCAGAGAAGTGGTTCACCCACGCCTCCCCGACCCTCTTCAATGCTGGAACCAACAGGC 901209 Query 259956 CGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATG 260015 ||||| || ||||| ||| | | |||||||| || |||||||| ||||| | Sbjct 901208 CGCAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAGGATGACAGCATCGAGGGGATCTACG 901149 Query 260016 ACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCAC 260075 ||||||| ||||| ||||| ||||||||||| | || || || || || | || | Sbjct 901148 ACACGCTGAAGCATTGCGCCCTCATCTCCAAATCAGCTGGAGGGATTGGCGTGGCAG--- 901092 Query 260076 ACAAGGTGC----GCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGC 260131 || ||| | || |||| |||| | || |||||||| ||| |||||||| Sbjct 901091 -TCAGCTGCATTAGATCCACGGGGAGCTACATCGCCGGCACCAATGGCTGTTCCAACGGG 901033 Query 260132 CTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 || || || ||| | | |||| ||| |||| ||||| || || || ||| Sbjct 901032 CTCGTCCCAATGTTGAGGGTTTACAACAACACAGCGCGTTATGTTGATCAG 900982 Score = 89.7 bits (98), Expect = 7e-12 Identities = 107/143 (75%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 262091 CAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTAC 262150 ||| | |||| || || ||| | | || | || ||||| ||||| |||||||||||| Sbjct 900684 CAGCTATGGTATGCAATCATCGAGTCGCAGACAGAAACCGGGACGCCGTACATGGTCTAC 900625 Query 262151 AAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAG-GCCAA 262209 || || ||| |||| || |||||||||||||| |||||||||| | || | ||| Sbjct 900624 AAAGATGCCTGCAACAGGAAGAGCAACCAGCAGAATCTGGGCACCATCA-AGTGCAGCAA 900566 Query 262210 CCTGTGCACCGAGATCGTCCAGT 262232 ||| ||||| || |||||| ||| Sbjct 900565 CCTCTGCACGGAAATCGTCGAGT 900543 >seq2861 Length=8583 Score = 89.7 bits (98), Expect = 7e-12 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 ||||| ||| | || || || | | ||||| || | || ||||| |||||||||||| Sbjct 5769 CGCTTCATGCAGGAAGTGCAGGTAACGGAGGCCCGGTGTTTCTACGGTTTCCAGATCGCC 5828 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCC 1456070 || || ||||||||||| || | ||| || ||||||||||| ||| |||||||||| Sbjct 5829 ATGGAGAACATCCACTCAGAGATGTACAGCCTGCTGATCGACACGTACATCAAGGACCC 5887 >seq230 Length=973959 Score = 89.7 bits (98), Expect = 7e-12 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 ||||| ||| | || || || | | ||||| || | || ||||| |||||||||||| Sbjct 833177 CGCTTCATGCAGGAAGTGCAGGTAACGGAGGCCCGGTGTTTCTACGGTTTCCAGATCGCC 833118 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCC 1456070 || || ||||||||||| || | ||| || ||||||||||| ||| |||||||||| Sbjct 833117 ATGGAGAACATCCACTCAGAGATGTACAGCCTGCTGATCGACACGTACATCAAGGACCC 833059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177039488844162