Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haplochromis_20burtoni_20[refseq_20GCF_5F000239415.1_202011-12-22] 8,001 sequences; 831,411,547 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq113 129 6e-25 >seq113 Length=1687717 Score = 129 bits (142), Expect = 6e-25 Identities = 893/1430 (62%), Gaps = 32/1430 (2%) Strand=Plus/Minus Query 7524 CTACTTGTTGAAAATCAACGGCGAATGCGCGGAACGAATTCAACACATGCTGTTGCGCGT 7583 |||| || | || ||||| ||| || || || || || |||||||| || | || Sbjct 901384 CTACCTGCTAAAGATCAATGGCAAAGTAGCTGAGCGTCCGCAGCACATGCTCATGAGGGT 901325 Query 7584 GGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTGGAAACGTACCAAATGATGTC 7643 ||| ||||| || ||||| || || || || | | | || || ||| | || |||| Sbjct 901324 GGCTGTGGGAATCCACGGGACGGATATCGAAGCAGTCATCGAGACCTACAACCTGCTGTC 901265 Query 7644 TTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCCGCGGGCACAAACGCGCCTCA 7703 ||| ||| || ||||| || || ||| | || || || || ||| ||| || Sbjct 901264 AGAGAAGTGGTTCACCCACGCCTCCCCGACCCTCTTCAATGCTGGAACCAACAGGCCGCA 901205 Query 7704 ATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGCATCGACGGCATTTACAACAC 7763 ||||| || || |||| ||||| || ||||||||||| || || ||| |||| Sbjct 901204 GCTGTCCAGCTGCTTCCTGCTCGCCATGAAGGATGACAGCATCGAGGGGATCTACGACAC 901145 Query 7764 GCTGCGCGATTGCGCCAATATTTCCAAATACGGCGGCGGAATAGGTCTGAACGTAAACGA 7823 |||| |||||||| || ||||||| | || || || || || || | | Sbjct 901144 GCTGAAGCATTGCGCCCTCATCTCCAAATCAGCTGGAGGGATTGGCGTGGCAGTCAGCTG 901085 Query 7824 CGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCAACGGAAAAGCCAGCGGTTTAGAGCC 7883 | | | ||| || ||| ||||| |||||| || ||| ||| | | || Sbjct 901084 CATTAGATCCACGGGGAGCTACATCGCCGGCACCAATGGCTGTTCCAACGGGCTCGTCCC 901025 Query 7884 CATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAGACCAGGGGGGAAAGCGCAAA-- 7941 |||||| | || | ||| ||| | | ||| |||| || |||||||| || |||| Sbjct 901024 AATGTTGAGGGTTTACAACAACACAGCGCGTTATGTTGATCAGGGGGGCAA---CAAAAG 900968 Query 7942 ----GGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGGACATTTACGCAGTGCTAAA 7997 |||||| ||||| || ||||||| |||||| || | | | | || | Sbjct 900967 ACCCGGCGCCTTCGCCATGTACCTGGAGCCCTGGCACTTCGATGTGTTTGACTTCCTGGA 900908 Query 7998 TCTGCGTCGCAACATGGGTTGCGAAGA-CAGCAAAGCGCGCGATCTATTCTTCGGATTGT 8056 ||| |||| ||| || || |||| ||| | || || |||| || ||| Sbjct 900907 GCTGAAGAAGAACACGGGAAAGGAGGAGCAGC-GAGCCAGGGACCTGTTCTACGCCCTGT 900849 Query 8057 GGGTGCCCGATCTGTTTATGAGGCGCGTTCATTTCGACGCACAATGGTCGCTCATGTGCC 8116 || | || || || || |||| ||| || | | ||| | | ||||| || ||||| | Sbjct 900848 GGATCCCTGACCTCTTCATGAAGCGGGTGGAGAACAACGAAGACTGGTCCCTGATGTGTC 900789 Query 8117 CCGATCGTTGCCCTTTATTAAAAAACGTTTACGGTTCAAAATTTGAACAATTGTACAAAC 8176 | | ||||| | | | | || | |||||| || | |||| Sbjct 900788 CGGCCGACTGCCCCGGGCTGGATGAGTGCTGGGGGGAGGAGTTTGAAGAACTCTACACCA 900729 Query 8177 AATACGAACACGA-CGGCGCGT---ACGTGCGGCAAGTGAAAGCGCGCGACCTGCACCGC 8232 ||| || | || || | || |||| | ||||| || | | || Sbjct 900728 GATATGAGAAGGAGGGGAGGGTGAAGCGTGTG----GTGAAGGCTCAGCAGCTATGGTAT 900673 Query 8233 GCCATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGC 8292 || || ||||| | || | |||||||| | |||||||||| | |||||||| || ||| Sbjct 900672 GCAATCATCGAGTCGCAGACAGAAACCGGGACGCCGTACATGGTCTACAAAGATGCCTGC 900613 Query 8293 AACGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGAA 8352 ||| || ||||| || || |||||||||| |||||||| || ||| | ||| Sbjct 900612 AACAGGAAGAGCAACCAGCAGAATCTGGGCACCATCAAGTGCAGCAACCTCTGCACGGAA 900553 Query 8353 ATTGTACAGTACAGCGCGC-CCGACGAAGTGGCCGTTTGCAATCTAGCGTCGGTGTGTTT 8411 || || |||||| | || ||||| ||||| ||||||||||| || || || | | Sbjct 900552 ATCGTCGAGTACA-CTAGCAAGGACGAGGTGGCGGTTTGCAATCTGGCCTCTGTCGCTCT 900494 Query 8412 AAACGCGTTCGTTGATCGACGCTCA-AACACTTACGACTTTGAACAATTGAAAAACGCCG 8470 ||| || || || | || | ||||| |||||| || ||||| | ||| Sbjct 900493 CAACATGTACG----TCACCCCTGAGCGGACTTATGACTTTAAAAAATTGGCA---TCCG 900441 Query 8471 TG---CAAGTGACGGTACGCAATTTAGATCGCATCATTGATGTCAATTTTTATCCCTTGG 8527 || |||| | || | || || | | || || |||| | || || ||| Sbjct 900440 TGACCAAAGTAATTGTCAGGAACTTGAACAAGGTTATCGACATCAACTACTACCCGGTGG 900381 Query 8528 AAGAAGCGCGCGTATCGAACATGCGCCACAGACCCGTTGGCGTGGGCGTGCAAGGTCTGG 8587 ||||||| | ||||||||||||||||| || | || | || || || || ||| Sbjct 900380 AAGAAGCCAGGAGGTCGAACATGCGCCACAGGCCGATAGGAATCGGGGTCCAGGGATTGG 900321 Query 8588 CCGACGCGTTTGCCATGTTGCGCCTCCCCTACGAAAGCCAAGAAGCGCGCATGCTCAACA 8647 | || || || | | |||| |||| ||||||| || || | ||||||||| Sbjct 900320 CTGATGCCTTCATCCTTATGCGTTATCCCTTTGAAAGCCCCGAGGCTCAACTGCTCAACA 900261 Query 8648 TAAAAATAGCGGAAACGGTGTATTACGGCGCATTAGAAGCCAGCTGTCAACTTGCCCGAG 8707 | | || || || ||||||| | ||| || ||||| ||||| | || ||| | Sbjct 900260 TCCAGATCTTTGAGACTATGTATTATGCCGCTTTGGAAGCGAGCTGCGAGCTGGCCGCCG 900201 Query 8708 AATTGGGCACGTACGAATCGTACGCGGGCAGCCCTGCCAGCCGCGGAATATTGCAATACG 8767 | | ||||| ||||| |||||| ||| || | || || || | || |||| Sbjct 900200 AGCTTGGCACCTACGAGACGTACGAAGGCTCGCCGGTGAGTAAGGGCATTCTCCAGTACG 900141 Query 8768 ACATGTGGAATGTCACGCCCACCTCTTTGTGGAATTGGAGCGATTTGAAACGCAAAATTG 8827 |||||||| | ||||| || ||||| | |||| |||| || || | Sbjct 900140 ACATGTGGGAGAAGACGCCAACGGACCTGTGGGACTGGAAGCTGCTGAAGGAGAAGATCG 900081 Query 8828 CTCAATTCGGTTTGCGCAATTCGCTGTTGGTGGCTTACATGCCCACCGCCACGACTGCTC 8887 | || || || | || ||| || || | |||||||| ||| | || || | Sbjct 900080 CCAAACATGGCGTGAGGAACAGCCTGCTGCTGTCCCCAATGCCCACGGCCTCCACCGCCC 900021 Query 8888 AAATAATGGGAAACAACGAATCCTTTGAGCCGTTCACCAACAACGTGTAC 8937 | || |||| |||||||| ||| | ||| | | ||| | |||| | ||| Sbjct 900020 AGATCCTGGGCAACAACGAGTCCATCGAGGCCTACACAAGCAACATCTAC 899971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505347853842520